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The map label for this gene is yjmB [H]

Identifier: 52787206

GI number: 52787206

Start: 3355457

End: 3356845

Strand: Reverse

Name: yjmB [H]

Synonym: BLi03515

Alternate gene names: 52787206

Gene position: 3356845-3355457 (Counterclockwise)

Preceding gene: 52787207

Following gene: 52787205

Centisome position: 79.5

GC content: 49.03

Gene sequence:

>1389_bases
ATGGAAATATCGACGAACAAACAAACCGAAACAGTCGCCGTCACTCAAGAGAAATTAAGTTTAAAAGAAAAGGTTTCTTA
CGGTTTTGGAGATTTTGGGAACGGATTTATGTTTGACCTTGGACAGCTCTATCTTCTGAAGTTTTTTACGGATGTTGCCG
GCATTCCGGCGGCGGCAGCCGGAGGCATTTTTCTTGTGAGCAAACTTTTCGCCGCTTTTGTCGATCCGATTGTGGGAACA
TCGATCGACTACAGGAAGAATATCGGCCCGAAAGGCAAATTCAGGCCGTATCTGCTATACGGAAGCTTTGTGCTTGCGAT
TTTGACGATATTGACCTTCATCTCGCCGAATCTGTCACCGACGGGCAAACTCATCTACGCTTATGCCTCATACATGCTTT
GGGGTCTCGGCTATTCCTTTGTCAACATCCCTTACGGCTCGCTCGGGGCTGCCATGACGCAAAACTCGGTGGAACGGACT
TCGCTTGCTTCCTTTCGCCAAGCCGGCTCGCTGGGCGCCCTGTTTGTGACGAGCATTGTTGTCATCCCGATGATTGTCAG
GTTTGACAACCCTGCGGTTGCCTATCCGGTCGTCATGGGGCTGATGTCTTTTCTGGGTGTGTTGTTTTTCTACATTTGCT
ACAGGAACTGTCAGGAACGGATCGTCGTAAAAGATGAGAAGTACAAACAGGAAAAAGTGACATTCAAAGCGATTTCAAAG
ACGTTTTTTACGAACAAGCCGCTCCTTACGCTAATATTCATGACAATTTTTACGATTTCAGCCTATAACCTTAAATCCGC
GATGCTGATTTATTTCGCGCAGTATAACCTCGGGAACGCCGAACTGATGGCCTACATGAATTTCATCATCATCGGCTCAT
CCTTTATCGGCGTCATCATGCTGCCGAAGCTCGTGAAGCTTTTTGGGAAAAAGCATACCGCCATTTTGGGGCTCGCGGTT
TCTGTCTGTGCCGATCTGATCAATTTTTTCGCACCGGGCAATGTCTTTGTTTTTACGATTCTCGCAAGCATCGCCTTCAT
CGGCATCAGCATTCCGAACGGAATCACCTGGGCATTCGTATCAGATGCGATCGATTACGGCGAGTGGAGAACAGGGGAAC
GGAAAGAAGGAACGGTATACTCGCTGTTTAATTTTTCGAGAAAGCTGGCTCAGTCGCTCTCCGGCTTCCTGTCAGGGATC
GGTCTCAGCATCATCGGCTATGTGCCGAATGCGGCCCAAAAAGCGGGGACGCTGCTCGGCATTAAAGCGATTCTCCTTTT
GTATCCGGCAGCAGCGCTGACGGCGGCCATTCTCGTTCTCGGCTACCTGTACCGTTTGACGGATCAGAAGCACGCCGAAA
TGGTCGCGGAAATCAAAGCGAGAACATAG

Upstream 100 bases:

>100_bases
GGATCTGCTACGAAAATGCAAAACACTATTTCCAGTTTGAAGTGAAAGATCGTTTGAAAGCTTAGATTCACAAATTGGCT
AGCAGAGGAGCTGCTTTTTC

Downstream 100 bases:

>100_bases
CGGAAATTCACTTTCTAAAAAGCGCTTTTGATATGGTAAACTGATGGTAACAACAGCAAGAAAAGGCGGGTAAAAAACAA
TGTCAGTAACGATTAAAGAT

Product: YjmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MEISTNKQTETVAVTQEKLSLKEKVSYGFGDFGNGFMFDLGQLYLLKFFTDVAGIPAAAAGGIFLVSKLFAAFVDPIVGT
SIDYRKNIGPKGKFRPYLLYGSFVLAILTILTFISPNLSPTGKLIYAYASYMLWGLGYSFVNIPYGSLGAAMTQNSVERT
SLASFRQAGSLGALFVTSIVVIPMIVRFDNPAVAYPVVMGLMSFLGVLFFYICYRNCQERIVVKDEKYKQEKVTFKAISK
TFFTNKPLLTLIFMTIFTISAYNLKSAMLIYFAQYNLGNAELMAYMNFIIIGSSFIGVIMLPKLVKLFGKKHTAILGLAV
SVCADLINFFAPGNVFVFTILASIAFIGISIPNGITWAFVSDAIDYGEWRTGERKEGTVYSLFNFSRKLAQSLSGFLSGI
GLSIIGYVPNAAQKAGTLLGIKAILLLYPAAALTAAILVLGYLYRLTDQKHAEMVAEIKART

Sequences:

>Translated_462_residues
MEISTNKQTETVAVTQEKLSLKEKVSYGFGDFGNGFMFDLGQLYLLKFFTDVAGIPAAAAGGIFLVSKLFAAFVDPIVGT
SIDYRKNIGPKGKFRPYLLYGSFVLAILTILTFISPNLSPTGKLIYAYASYMLWGLGYSFVNIPYGSLGAAMTQNSVERT
SLASFRQAGSLGALFVTSIVVIPMIVRFDNPAVAYPVVMGLMSFLGVLFFYICYRNCQERIVVKDEKYKQEKVTFKAISK
TFFTNKPLLTLIFMTIFTISAYNLKSAMLIYFAQYNLGNAELMAYMNFIIIGSSFIGVIMLPKLVKLFGKKHTAILGLAV
SVCADLINFFAPGNVFVFTILASIAFIGISIPNGITWAFVSDAIDYGEWRTGERKEGTVYSLFNFSRKLAQSLSGFLSGI
GLSIIGYVPNAAQKAGTLLGIKAILLLYPAAALTAAILVLGYLYRLTDQKHAEMVAEIKART
>Mature_462_residues
MEISTNKQTETVAVTQEKLSLKEKVSYGFGDFGNGFMFDLGQLYLLKFFTDVAGIPAAAAGGIFLVSKLFAAFVDPIVGT
SIDYRKNIGPKGKFRPYLLYGSFVLAILTILTFISPNLSPTGKLIYAYASYMLWGLGYSFVNIPYGSLGAAMTQNSVERT
SLASFRQAGSLGALFVTSIVVIPMIVRFDNPAVAYPVVMGLMSFLGVLFFYICYRNCQERIVVKDEKYKQEKVTFKAISK
TFFTNKPLLTLIFMTIFTISAYNLKSAMLIYFAQYNLGNAELMAYMNFIIIGSSFIGVIMLPKLVKLFGKKHTAILGLAV
SVCADLINFFAPGNVFVFTILASIAFIGISIPNGITWAFVSDAIDYGEWRTGERKEGTVYSLFNFSRKLAQSLSGFLSGI
GLSIIGYVPNAAQKAGTLLGIKAILLLYPAAALTAAILVLGYLYRLTDQKHAEMVAEIKART

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI145693206, Length=449, Percent_Identity=41.2026726057906, Blast_Score=354, Evalue=7e-99,
Organism=Escherichia coli, GI48994989, Length=444, Percent_Identity=40.0900900900901, Blast_Score=353, Evalue=1e-98,
Organism=Escherichia coli, GI1787902, Length=456, Percent_Identity=32.2368421052632, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI1786466, Length=443, Percent_Identity=28.2167042889391, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87082306, Length=455, Percent_Identity=28.7912087912088, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1790561, Length=442, Percent_Identity=27.3755656108597, Blast_Score=158, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 50644; Mature: 50644

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MEISTNKQTETVAVTQEKLSLKEKVSYGFGDFGNGFMFDLGQLYLLKFFTDVAGIPAAAA
CCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHC
GGIFLVSKLFAAFVDPIVGTSIDYRKNIGPKGKFRPYLLYGSFVLAILTILTFISPNLSP
CHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
TGKLIYAYASYMLWGLGYSFVNIPYGSLGAAMTQNSVERTSLASFRQAGSLGALFVTSIV
CHHHHHHHHHHHHHHHCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VIPMIVRFDNPAVAYPVVMGLMSFLGVLFFYICYRNCQERIVVKDEKYKQEKVTFKAISK
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEECCHHHHHHHHHHHHHHH
TFFTNKPLLTLIFMTIFTISAYNLKSAMLIYFAQYNLGNAELMAYMNFIIIGSSFIGVIM
HHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LPKLVKLFGKKHTAILGLAVSVCADLINFFAPGNVFVFTILASIAFIGISIPNGITWAFV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCHHHH
SDAIDYGEWRTGERKEGTVYSLFNFSRKLAQSLSGFLSGIGLSIIGYVPNAAQKAGTLLG
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IKAILLLYPAAALTAAILVLGYLYRLTDQKHAEMVAEIKART
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]