| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is ytdP [H]
Identifier: 52786892
GI number: 52786892
Start: 3048443
End: 3050752
Strand: Direct
Name: ytdP [H]
Synonym: BLi03167
Alternate gene names: 52786892
Gene position: 3048443-3050752 (Clockwise)
Preceding gene: 52786882
Following gene: 52786898
Centisome position: 72.19
GC content: 43.59
Gene sequence:
>2310_bases ATGAAGAGAAAACAATATAAGTTTTACTATAAACTGGTGACCTTCTTTCTCATTCTGAGCACCATTCCGGTCATCATCGT CGGCTTTTTTTCCTATCAGAGATCAGCGGAAACGATTGAACAAAACGTTACAAACGAAAAGCTCCAAACCGTTAGCCAGA CACAGCTAAATATTGAACATATTTTAAAAACGGTTGACCATTCCTTCACCAATTACGTCCGTTCCTATCCTTTAATTCAG ACGCTCAGCCGCACCATTACACCAGAACGCTTTCAGCTGTATAACCAAATCAACAAGGAATTAAACGAACTCCAGACATT CGATACCGATCTGTCGGATATCACGCTGATCAGCCAAGAAAAAAAGTGGTATATCAACAACTCCGGTTTATACCCTTTAG ATCAGGGAAAACAAGCCATCACGCTCTCGCTTTACAACGCTTTAAAAAGCCGTTCCAGCTGGGTGCTTGAAAAAAACAAC GACCTTGTCGCCACAAAAGAAGGGGCTTCGGGAAACTGCCTGTACAACGTCAATCTGGTCAAACAGCTTCCCCTGAACAG CATGGAAAACAGAGGCCTTGCGATCGCGAGCATTCCTTCTTGTTCGCTTGTCAAGCGCATGCCGGATCATTCAAAAACAA ACAGCATGATGGTGCTTGATGACAACGGACGGATCATCCTTCACTCAGACCCGTCAATGATCGGGCAATCGATCAAACAA GAAAATTACTTCAAAACGATCCGCCGGCACCAAGAAAAAAACGGCCAGTTTGATACAACAGTCAGCGACACCGCCTATAA CATTACATACCAGAAATCAGATTATAATAATTGGATATACGTTTCGTTAACGACCATTCCGGAACTCTATCAGCAGACGG CATCAATCGGCTGGTTCACGTTTACGATCTGCCTCATTTTGTTAGCGCTTTCATATTTATTCTCCTGGTTTGGTTCACGC CATTTTTACAGGCCGATCAAGGTTTTATACGAATCCGTCTCCGGCTTTTCTCCAGGAGCCGATTCCGTCCAAGAGAAACC GAAAAACGAATTTGAACTGATTGAACGGAACATTAAAGAAATGAAAAATAAAAACCATGATCTGAAGGTGCGCGTCGAAC AGCAGGTCACCCAGCTGAAGCAGTATTTTTTAACAAGGCTATTGCTCGGCAAGCTGAGCGAAGAAGAAATCAAAGACCGC TTTACTGGGCTCGGCTTCCCTGAAGATTGGAGCCATCTGTCGGTATTCACACTGCAAATTGATACATTGAAAGACACATC ATACGAAAAAAAGGATCTTGATGTCCTGCTGTTTGCGATCAACAGCCTTGTCGAACGATCTGTGCCCAAGAATAAGCGCC TTCCGCCGGTTGTCATTGATAAAACGCAGACCATCATCATGCTGAATCGCGGACAGCCGCTGGAAAGGTTTCAGGAAGAC TTAGAGCATACCGCATCAGCCATTAAGGATAAAATTCATGAAGAGCTTGGGTTGTTCGTCAGCATCGGCATCAGCCAGCC ATTTACAAGTCTTGCAATGTCAAAGCGCGGTTATTTGGAAGGGCTTGAAGCACTGACATACCGTCTGAAATCCGGAAAAC ACGCGGTGATTTTCTATGAACACCTTGACCGCAACAAAGCGTTTTTAACCCAGTTTCCGAAGCAGATTCAAAATGAACTG TTTGAAGCCATTAAAACGTGCAACCGTAAACAAGCGGCCGAACAGCTTCACCTTCTTCTTGAGTCGATTTGTTCTGAAAA CATGAATCCGCATCACTGCCAGATTGCGATTGCAAGGCTGTTGAACAACTTGATTGAATTTATGCATTTGCTCGGAATCG AGATTTTTGAACCGAACGAAAATACGATGCTGTACGACGACGTCTTTGAGCTGACGACCATCGAGGAAATTGAAAGCTGG CTGAACGCGCAGATTATCGTTAAAATGATCGATACACTCAGCATCAGAGAAGAATCGCAATACAAAAACATCTCAGAAAA AATCGTCCATATTATCCAGCAGGAATTCGACACGGACTTGACGCTCGAATCGATCGCAGGAAGGCTTCATTACAACCCCA ATTATTTAAGCAGCATCTTCAGGAAGGAAATGAAAATATCGTTCAGCGAATACTTGTCATCATACAGGCATCATATCGCG AAAAACTGGCTGACGGAAACGACTATGTCCGTAAAAGAAATTTCCGAAAAACTGAAATACAAAAATCCGCAGAATTTCAT CCGTTCATTTAAAAAGCTGGAAGGAATCACACCCGGCAAATACCGCGAGCTGAAAAACCATTCGGCATAA
Upstream 100 bases:
>100_bases AATGAAACGATGGTTAGAAAATGATTATTGACAAATTCACACAAAAGTCGGATTAATTATATATGAACAACTCAAACGAA GATTTGTTGGGGGGGAATTT
Downstream 100 bases:
>100_bases AAAGACAATCCCGGCTCCTCGAAATTGTCTACATTGTTGACAAAATCCCAAAACGACTTTTAGTTTTGGGATTTTGTCAT CCTTTCAGCGTGAATGAAAA
Product: YtdP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MKRKQYKFYYKLVTFFLILSTIPVIIVGFFSYQRSAETIEQNVTNEKLQTVSQTQLNIEHILKTVDHSFTNYVRSYPLIQ TLSRTITPERFQLYNQINKELNELQTFDTDLSDITLISQEKKWYINNSGLYPLDQGKQAITLSLYNALKSRSSWVLEKNN DLVATKEGASGNCLYNVNLVKQLPLNSMENRGLAIASIPSCSLVKRMPDHSKTNSMMVLDDNGRIILHSDPSMIGQSIKQ ENYFKTIRRHQEKNGQFDTTVSDTAYNITYQKSDYNNWIYVSLTTIPELYQQTASIGWFTFTICLILLALSYLFSWFGSR HFYRPIKVLYESVSGFSPGADSVQEKPKNEFELIERNIKEMKNKNHDLKVRVEQQVTQLKQYFLTRLLLGKLSEEEIKDR FTGLGFPEDWSHLSVFTLQIDTLKDTSYEKKDLDVLLFAINSLVERSVPKNKRLPPVVIDKTQTIIMLNRGQPLERFQED LEHTASAIKDKIHEELGLFVSIGISQPFTSLAMSKRGYLEGLEALTYRLKSGKHAVIFYEHLDRNKAFLTQFPKQIQNEL FEAIKTCNRKQAAEQLHLLLESICSENMNPHHCQIAIARLLNNLIEFMHLLGIEIFEPNENTMLYDDVFELTTIEEIESW LNAQIIVKMIDTLSIREESQYKNISEKIVHIIQQEFDTDLTLESIAGRLHYNPNYLSSIFRKEMKISFSEYLSSYRHHIA KNWLTETTMSVKEISEKLKYKNPQNFIRSFKKLEGITPGKYRELKNHSA
Sequences:
>Translated_769_residues MKRKQYKFYYKLVTFFLILSTIPVIIVGFFSYQRSAETIEQNVTNEKLQTVSQTQLNIEHILKTVDHSFTNYVRSYPLIQ TLSRTITPERFQLYNQINKELNELQTFDTDLSDITLISQEKKWYINNSGLYPLDQGKQAITLSLYNALKSRSSWVLEKNN DLVATKEGASGNCLYNVNLVKQLPLNSMENRGLAIASIPSCSLVKRMPDHSKTNSMMVLDDNGRIILHSDPSMIGQSIKQ ENYFKTIRRHQEKNGQFDTTVSDTAYNITYQKSDYNNWIYVSLTTIPELYQQTASIGWFTFTICLILLALSYLFSWFGSR HFYRPIKVLYESVSGFSPGADSVQEKPKNEFELIERNIKEMKNKNHDLKVRVEQQVTQLKQYFLTRLLLGKLSEEEIKDR FTGLGFPEDWSHLSVFTLQIDTLKDTSYEKKDLDVLLFAINSLVERSVPKNKRLPPVVIDKTQTIIMLNRGQPLERFQED LEHTASAIKDKIHEELGLFVSIGISQPFTSLAMSKRGYLEGLEALTYRLKSGKHAVIFYEHLDRNKAFLTQFPKQIQNEL FEAIKTCNRKQAAEQLHLLLESICSENMNPHHCQIAIARLLNNLIEFMHLLGIEIFEPNENTMLYDDVFELTTIEEIESW LNAQIIVKMIDTLSIREESQYKNISEKIVHIIQQEFDTDLTLESIAGRLHYNPNYLSSIFRKEMKISFSEYLSSYRHHIA KNWLTETTMSVKEISEKLKYKNPQNFIRSFKKLEGITPGKYRELKNHSA >Mature_769_residues MKRKQYKFYYKLVTFFLILSTIPVIIVGFFSYQRSAETIEQNVTNEKLQTVSQTQLNIEHILKTVDHSFTNYVRSYPLIQ TLSRTITPERFQLYNQINKELNELQTFDTDLSDITLISQEKKWYINNSGLYPLDQGKQAITLSLYNALKSRSSWVLEKNN DLVATKEGASGNCLYNVNLVKQLPLNSMENRGLAIASIPSCSLVKRMPDHSKTNSMMVLDDNGRIILHSDPSMIGQSIKQ ENYFKTIRRHQEKNGQFDTTVSDTAYNITYQKSDYNNWIYVSLTTIPELYQQTASIGWFTFTICLILLALSYLFSWFGSR HFYRPIKVLYESVSGFSPGADSVQEKPKNEFELIERNIKEMKNKNHDLKVRVEQQVTQLKQYFLTRLLLGKLSEEEIKDR FTGLGFPEDWSHLSVFTLQIDTLKDTSYEKKDLDVLLFAINSLVERSVPKNKRLPPVVIDKTQTIIMLNRGQPLERFQED LEHTASAIKDKIHEELGLFVSIGISQPFTSLAMSKRGYLEGLEALTYRLKSGKHAVIFYEHLDRNKAFLTQFPKQIQNEL FEAIKTCNRKQAAEQLHLLLESICSENMNPHHCQIAIARLLNNLIEFMHLLGIEIFEPNENTMLYDDVFELTTIEEIESW LNAQIIVKMIDTLSIREESQYKNISEKIVHIIQQEFDTDLTLESIAGRLHYNPNYLSSIFRKEMKISFSEYLSSYRHHIA KNWLTETTMSVKEISEKLKYKNPQNFIRSFKKLEGITPGKYRELKNHSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018060 [H]
Pfam domain/function: PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 89484; Mature: 89484
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKQYKFYYKLVTFFLILSTIPVIIVGFFSYQRSAETIEQNVTNEKLQTVSQTQLNIEH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILKTVDHSFTNYVRSYPLIQTLSRTITPERFQLYNQINKELNELQTFDTDLSDITLISQE HHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECC KKWYINNSGLYPLDQGKQAITLSLYNALKSRSSWVLEKNNDLVATKEGASGNCLYNVNLV CCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEEHHH KQLPLNSMENRGLAIASIPSCSLVKRMPDHSKTNSMMVLDDNGRIILHSDPSMIGQSIKQ HHCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHH ENYFKTIRRHQEKNGQFDTTVSDTAYNITYQKSDYNNWIYVSLTTIPELYQQTASIGWFT HHHHHHHHHHHHCCCCCCCEECCCEEEEEEEECCCCCEEEEEECHHHHHHHHHHCCHHHH FTICLILLALSYLFSWFGSRHFYRPIKVLYESVSGFSPGADSVQEKPKNEFELIERNIKE HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHH MKNKNHDLKVRVEQQVTQLKQYFLTRLLLGKLSEEEIKDRFTGLGFPEDWSHLSVFTLQI HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEE DTLKDTSYEKKDLDVLLFAINSLVERSVPKNKRLPPVVIDKTQTIIMLNRGQPLERFQED EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHH LEHTASAIKDKIHEELGLFVSIGISQPFTSLAMSKRGYLEGLEALTYRLKSGKHAVIFYE HHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH HLDRNKAFLTQFPKQIQNELFEAIKTCNRKQAAEQLHLLLESICSENMNPHHCQIAIARL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LNNLIEFMHLLGIEIFEPNENTMLYDDVFELTTIEEIESWLNAQIIVKMIDTLSIREESQ HHHHHHHHHHHCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH YKNISEKIVHIIQQEFDTDLTLESIAGRLHYNPNYLSSIFRKEMKISFSEYLSSYRHHIA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNWLTETTMSVKEISEKLKYKNPQNFIRSFKKLEGITPGKYRELKNHSA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCC >Mature Secondary Structure MKRKQYKFYYKLVTFFLILSTIPVIIVGFFSYQRSAETIEQNVTNEKLQTVSQTQLNIEH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILKTVDHSFTNYVRSYPLIQTLSRTITPERFQLYNQINKELNELQTFDTDLSDITLISQE HHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECC KKWYINNSGLYPLDQGKQAITLSLYNALKSRSSWVLEKNNDLVATKEGASGNCLYNVNLV CCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEEHHH KQLPLNSMENRGLAIASIPSCSLVKRMPDHSKTNSMMVLDDNGRIILHSDPSMIGQSIKQ HHCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHH ENYFKTIRRHQEKNGQFDTTVSDTAYNITYQKSDYNNWIYVSLTTIPELYQQTASIGWFT HHHHHHHHHHHHCCCCCCCEECCCEEEEEEEECCCCCEEEEEECHHHHHHHHHHCCHHHH FTICLILLALSYLFSWFGSRHFYRPIKVLYESVSGFSPGADSVQEKPKNEFELIERNIKE HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHH MKNKNHDLKVRVEQQVTQLKQYFLTRLLLGKLSEEEIKDRFTGLGFPEDWSHLSVFTLQI HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEE DTLKDTSYEKKDLDVLLFAINSLVERSVPKNKRLPPVVIDKTQTIIMLNRGQPLERFQED EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHH LEHTASAIKDKIHEELGLFVSIGISQPFTSLAMSKRGYLEGLEALTYRLKSGKHAVIFYE HHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH HLDRNKAFLTQFPKQIQNELFEAIKTCNRKQAAEQLHLLLESICSENMNPHHCQIAIARL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LNNLIEFMHLLGIEIFEPNENTMLYDDVFELTTIEEIESWLNAQIIVKMIDTLSIREESQ HHHHHHHHHHHCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH YKNISEKIVHIIQQEFDTDLTLESIAGRLHYNPNYLSSIFRKEMKISFSEYLSSYRHHIA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNWLTETTMSVKEISEKLKYKNPQNFIRSFKKLEGITPGKYRELKNHSA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]