Click here to switch to the map view.

The map label for this gene is ywqM [H]

Identifier: 52786898

GI number: 52786898

Start: 3056607

End: 3057500

Strand: Direct

Name: ywqM [H]

Synonym: BLi03173

Alternate gene names: 52786898

Gene position: 3056607-3057500 (Clockwise)

Preceding gene: 52786892

Following gene: 52786904

Centisome position: 72.39

GC content: 46.76

Gene sequence:

>894_bases
ATGGAGATCCGACACTTGAAAACATTTAAAACAATCGTGGATATCGGCGGTTTTACCCGTGCTGCCGATTATTTAGGATA
TGCACAGTCCACTGTGACTTCGCACGTTCAAGCAATCGAACAAGAATTAAGAAAGCCGCTGTTCTACCGGCTCGGGAAAA
AAATGATGCTGACAGAAGCGGGAAAGCACCTTCTCCCTTATGCCGCAGAAATGGTCGAGCTGTATGAAAAAGCGAGGCAC
ATTCCGGAAAACGACCAGGAGCCGTCGGGAAACTTGATCATCGGCGCCTCGGAATCTTTAACGGTATACAGGCTGCCCGC
CATTCTTCACGAATTTACAAGCAAATATCCGCAGGTCACGGTCACTTTAAAGTCTTCCACGTGCTGGCAGCTGAGAGACG
AATTGAAACAGGGAAAAATCGATGTCGCTTTTCTTTTGGACAACGACCGGAAAGAAAACGACCTTCATGTTGAAAAGCTG
GTCAATGAGCCGATGGTGTTCATCTTTCCCAAAGAACACCCGGCAGGACAAAAAGCTCTTGATGATTTGACTTTTAACGC
AAATGAAACGTTTTTATATACCGAGCACGGCTGCAGCTACCGTGATTTTTTTGAGGAATATTTACGTCAAAGGGGAGTCA
TTGCCGACCATACGATGGAGTTTTGGAGTGTCGAAGCGATTAAACAATGCGTAATGTGCGGTTTGGGCGTCTCCCTTCTT
CCTTTGATCACAACGCGCACTGATATCGAAGAAGGAAAGCTTCAGGGCACGCTGGTCCGCGACGCCCTGTTTTCCACTCA
AATGGTTTATCATAAAAACAAATGGCTTTCTCCTGCTATGGCGGCTTTTACGGATATCGTCCGCAGGAAGGCAAGAGAAT
GGGAACAGACATAA

Upstream 100 bases:

>100_bases
TAAAATGATTGTAATCATGTTCGATTCATCAGTAAAATAGATATTATCGATCTGCAACTTCGAATTTTTCGATATAAGAT
AAAAAAGGGAGATGGACGAG

Downstream 100 bases:

>100_bases
CATCCCTATATGCCTTCGGTATTCATCAGCACGATCCGCCAGCCGTCCGGATCTTCCACCGTTGCCCCTTTTTCCTTCCA
ATACGGATTTTCAGGCGGCA

Product: YwqM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEIRHLKTFKTIVDIGGFTRAADYLGYAQSTVTSHVQAIEQELRKPLFYRLGKKMMLTEAGKHLLPYAAEMVELYEKARH
IPENDQEPSGNLIIGASESLTVYRLPAILHEFTSKYPQVTVTLKSSTCWQLRDELKQGKIDVAFLLDNDRKENDLHVEKL
VNEPMVFIFPKEHPAGQKALDDLTFNANETFLYTEHGCSYRDFFEEYLRQRGVIADHTMEFWSVEAIKQCVMCGLGVSLL
PLITTRTDIEEGKLQGTLVRDALFSTQMVYHKNKWLSPAMAAFTDIVRRKAREWEQT

Sequences:

>Translated_297_residues
MEIRHLKTFKTIVDIGGFTRAADYLGYAQSTVTSHVQAIEQELRKPLFYRLGKKMMLTEAGKHLLPYAAEMVELYEKARH
IPENDQEPSGNLIIGASESLTVYRLPAILHEFTSKYPQVTVTLKSSTCWQLRDELKQGKIDVAFLLDNDRKENDLHVEKL
VNEPMVFIFPKEHPAGQKALDDLTFNANETFLYTEHGCSYRDFFEEYLRQRGVIADHTMEFWSVEAIKQCVMCGLGVSLL
PLITTRTDIEEGKLQGTLVRDALFSTQMVYHKNKWLSPAMAAFTDIVRRKAREWEQT
>Mature_297_residues
MEIRHLKTFKTIVDIGGFTRAADYLGYAQSTVTSHVQAIEQELRKPLFYRLGKKMMLTEAGKHLLPYAAEMVELYEKARH
IPENDQEPSGNLIIGASESLTVYRLPAILHEFTSKYPQVTVTLKSSTCWQLRDELKQGKIDVAFLLDNDRKENDLHVEKL
VNEPMVFIFPKEHPAGQKALDDLTFNANETFLYTEHGCSYRDFFEEYLRQRGVIADHTMEFWSVEAIKQCVMCGLGVSLL
PLITTRTDIEEGKLQGTLVRDALFSTQMVYHKNKWLSPAMAAFTDIVRRKAREWEQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=33.1103678929766, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1787806, Length=241, Percent_Identity=26.5560165975104, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=27.8523489932886, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=26.8292682926829, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=27.0916334661355, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=27.1255060728745, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=23.728813559322, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=25.1748251748252, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=27.6150627615063, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=23.5915492957746, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=26.4822134387352, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790208, Length=246, Percent_Identity=27.2357723577236, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=24.7619047619048, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=26.0726072607261, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=24.7967479674797, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789173, Length=296, Percent_Identity=27.027027027027, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=22.5409836065574, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34184; Mature: 34184

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRHLKTFKTIVDIGGFTRAADYLGYAQSTVTSHVQAIEQELRKPLFYRLGKKMMLTEA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
GKHLLPYAAEMVELYEKARHIPENDQEPSGNLIIGASESLTVYRLPAILHEFTSKYPQVT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCEEE
VTLKSSTCWQLRDELKQGKIDVAFLLDNDRKENDLHVEKLVNEPMVFIFPKEHPAGQKAL
EEEECCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHH
DDLTFNANETFLYTEHGCSYRDFFEEYLRQRGVIADHTMEFWSVEAIKQCVMCGLGVSLL
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
PLITTRTDIEEGKLQGTLVRDALFSTQMVYHKNKWLSPAMAAFTDIVRRKAREWEQT
HHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIRHLKTFKTIVDIGGFTRAADYLGYAQSTVTSHVQAIEQELRKPLFYRLGKKMMLTEA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
GKHLLPYAAEMVELYEKARHIPENDQEPSGNLIIGASESLTVYRLPAILHEFTSKYPQVT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCEEE
VTLKSSTCWQLRDELKQGKIDVAFLLDNDRKENDLHVEKLVNEPMVFIFPKEHPAGQKAL
EEEECCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHH
DDLTFNANETFLYTEHGCSYRDFFEEYLRQRGVIADHTMEFWSVEAIKQCVMCGLGVSLL
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
PLITTRTDIEEGKLQGTLVRDALFSTQMVYHKNKWLSPAMAAFTDIVRRKAREWEQT
HHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]