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The map label for this gene is yocF [H]

Identifier: 52786543

GI number: 52786543

Start: 2692028

End: 2693140

Strand: Direct

Name: yocF [H]

Synonym: BLi02808

Alternate gene names: 52786543

Gene position: 2692028-2693140 (Clockwise)

Preceding gene: 52786542

Following gene: 52786544

Centisome position: 63.75

GC content: 40.61

Gene sequence:

>1113_bases
ATGTTCAAAAAACATTTTACATTTCAAAAACTGAACGGGATCTCGCCGTATATATGGACAATATTTTTCATCCTTCCCTT
CTACTTTATCATGCAATCATCATCTACACTTGTTATCGTCGTCGGCATCATTTTGACGCTTTTATTTTTTGCGGTATACA
GATTTGCTTTTGTCTCAAAAGGCTGGGACGTTTATTTGTGGGCGTTTATTTTAATCGGCATTTCAACCGCTTCGATTATG
ATGTTCAGTTATATTTATTTTGCTTTTTTTATCGCATATTTTATAGGGAACATTAAAAAACGGGCCCCTTTTCATATTTT
ATATTACGTCCACTTAATAAGCGCAGCCGTCGCTGCCAACTTCAGTCTCGTGTTAAAAAAGGAATTTTTTCTGACACAAA
TTCCCTTTGTGGTCATCACCCTCATCAGTGCGATTTTATTGCCGTTCAGCATTAGAAGCCGCAAGGAGCGTGAACGCCTG
GAAGAAAAGCTCGAGTATGCTAATGAACGGATTGCCAATTTGGTAAAATTAGAAGAACGGCAGCGGATTGCCCGCGACCT
CCATGATACACTTGGACAAAAGCTGTCTCTTATCGGTTTAAAAAGCGACTTGGCGAGAAAATTAATTTACAAAGATCCCG
ATCAAGCCGCGCGTGAACTGAAAAGCGTTCAGCAAACTGCGAGAACTTCTTTAAATGAAGTCAGAAAAATCGTATCCTCC
ATGAAAGGCATCCGGCTCAAGGATGAAATCATAAACATCAAACAAATTCTTGAAGCAGCCGGCATTGCGTTCATCTATGA
AGAAGATAAATTGCCGGAAAATATCTCATTGCTTAATGAAAACATATTGAGCATGTGCTTGAAGGAAGCTGTCACTAATG
TCGTCAAACACAGCCAGGCTAAGACCTGCCGCGTTGACATCCAGCAGCTCTGGAAGGAGGTTGTCATTACAGTGACTGAC
GATGGAACGTTTCAAGGTGAAGAGAAGTGCTTTTCAAAAGGACACGGCTTGCTTGGCATGAGAGAACGGCTTGAATTTGC
AAACGGAAGCCTACACATTGATACAAAAAACGGCACCAAGCTTACCATGTCAATTCCTAACAACTCAAAATAA

Upstream 100 bases:

>100_bases
ATCAACAAGAAGACTTCCTTTTTATTGTCCGATGATGCAATCAGGCTCCGGCAATGGTAAAGTTACTCTAAAGATGAAAA
GCTGAAAATGAGGTTATAAC

Downstream 100 bases:

>100_bases
AAAAAAAGGATGGCTTACATGATTAGTATATTTATTGCGGAAGATCAGCAGATGCTCTTGGGCGCTTTAGGATCGCTTCT
GAACTTAGAAGATGATATGG

Product: YocF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MFKKHFTFQKLNGISPYIWTIFFILPFYFIMQSSSTLVIVVGIILTLLFFAVYRFAFVSKGWDVYLWAFILIGISTASIM
MFSYIYFAFFIAYFIGNIKKRAPFHILYYVHLISAAVAANFSLVLKKEFFLTQIPFVVITLISAILLPFSIRSRKERERL
EEKLEYANERIANLVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPDQAARELKSVQQTARTSLNEVRKIVSS
MKGIRLKDEIINIKQILEAAGIAFIYEEDKLPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVTD
DGTFQGEEKCFSKGHGLLGMRERLEFANGSLHIDTKNGTKLTMSIPNNSK

Sequences:

>Translated_370_residues
MFKKHFTFQKLNGISPYIWTIFFILPFYFIMQSSSTLVIVVGIILTLLFFAVYRFAFVSKGWDVYLWAFILIGISTASIM
MFSYIYFAFFIAYFIGNIKKRAPFHILYYVHLISAAVAANFSLVLKKEFFLTQIPFVVITLISAILLPFSIRSRKERERL
EEKLEYANERIANLVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPDQAARELKSVQQTARTSLNEVRKIVSS
MKGIRLKDEIINIKQILEAAGIAFIYEEDKLPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVTD
DGTFQGEEKCFSKGHGLLGMRERLEFANGSLHIDTKNGTKLTMSIPNNSK
>Mature_370_residues
MFKKHFTFQKLNGISPYIWTIFFILPFYFIMQSSSTLVIVVGIILTLLFFAVYRFAFVSKGWDVYLWAFILIGISTASIM
MFSYIYFAFFIAYFIGNIKKRAPFHILYYVHLISAAVAANFSLVLKKEFFLTQIPFVVITLISAILLPFSIRSRKERERL
EEKLEYANERIANLVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPDQAARELKSVQQTARTSLNEVRKIVSS
MKGIRLKDEIINIKQILEAAGIAFIYEEDKLPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVTD
DGTFQGEEKCFSKGHGLLGMRERLEFANGSLHIDTKNGTKLTMSIPNNSK

Specific function: Member of the two-component regulatory system desR/desK, responsible for cold induction of the des gene coding for the Delta5 acyl-lipid desaturase. Acts as a sensor of the membrane fluidity. Probably activates desR by phosphorylation [H]

COG id: COG4585

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI87082311, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787474, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011712 [H]

Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 42523; Mature: 42523

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEECCCCCC
>Mature Secondary Structure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EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]