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The map label for this gene is yocG [H]

Identifier: 52786544

GI number: 52786544

Start: 2693159

End: 2693758

Strand: Direct

Name: yocG [H]

Synonym: BLi02809

Alternate gene names: 52786544

Gene position: 2693159-2693758 (Clockwise)

Preceding gene: 52786543

Following gene: 52786546

Centisome position: 63.78

GC content: 44.0

Gene sequence:

>600_bases
ATGATTAGTATATTTATTGCGGAAGATCAGCAGATGCTCTTGGGCGCTTTAGGATCGCTTCTGAACTTAGAAGATGATAT
GGAAGTCGTCGGCAAAGGCACTACCGGACAAGATGCCGTTGATTTCACAAAAAAACATCGGCCTGATATATGCATTATGG
ACATTGAAATGCCCGGAAAGACGGGGCTTGAAGCTGCTGAGGAATTAAAGGATACAGGCTGCAACATTATTATCTTAACC
ACTTTTGCCCGCCCCGGCTATTTTCAGCGAGCCATTAAAGCAGGTGTTAAAGGCTATTTGTTAAAGGACAGCCCAAGCGA
AGAGCTTGCGAGCGCCATCCGCAGCGTCATGAAAGGAAAGCGGATCTATGCGCCTGAACTGATGGAAGACATGTACAGTG
AGGCCAATCCCCTCACAGATAGAGAAAAAGAAGTGCTTGAACTTGTGGCTGACGGAAAAAACACAAAAGAAATCGCCCAA
GAACTCAGCATCAAAAGCGGAACCGTACGAAATTATATCTCAATGATTCTTGAAAAGCTTGAGGTGAAAAATCGGATTGA
AGCCATTACTCGTTCAAAGGAAAAAGGCTGGTTTAAATAA

Upstream 100 bases:

>100_bases
TGAATTTGCAAACGGAAGCCTACACATTGATACAAAAAACGGCACCAAGCTTACCATGTCAATTCCTAACAACTCAAAAT
AAAAAAAAAGGATGGCTTAC

Downstream 100 bases:

>100_bases
AAAGAGGATCTTGCCATATGTCCAAGATCCTCTTTGACGAATCAGCCGCTCCCGCGGGTGAAAAATATTCCTTATCTACA
CGAACATCTTCTTGACAAGC

Product: YocG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGKTGLEAAEELKDTGCNIIILT
TFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGKRIYAPELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQ
ELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGWFK

Sequences:

>Translated_199_residues
MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGKTGLEAAEELKDTGCNIIILT
TFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGKRIYAPELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQ
ELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGWFK
>Mature_199_residues
MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGKTGLEAAEELKDTGCNIIILT
TFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGKRIYAPELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQ
ELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGWFK

Specific function: Member of the two-component regulatory system desR/desK, responsible for cold induction of the des gene coding for the Delta5 acyl-lipid desaturase [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=32.8282828282828, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788222, Length=199, Percent_Identity=28.643216080402, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=33.6734693877551, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787473, Length=199, Percent_Identity=29.1457286432161, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786747, Length=201, Percent_Identity=23.8805970149254, Blast_Score=70, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22193; Mature: 22193

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGK
CEEEEEECCHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCC
TGLEAAEELKDTGCNIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGK
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCC
RIYAPELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
EVKNRIEAITRSKEKGWFK
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGK
CEEEEEECCHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCC
TGLEAAEELKDTGCNIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGK
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCC
RIYAPELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
EVKNRIEAITRSKEKGWFK
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]