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The map label for this gene is yodJ [H]

Identifier: 52786028

GI number: 52786028

Start: 2240763

End: 2241584

Strand: Reverse

Name: yodJ [H]

Synonym: BLi02284

Alternate gene names: 52786028

Gene position: 2241584-2240763 (Counterclockwise)

Preceding gene: 52786029

Following gene: 52786025

Centisome position: 53.08

GC content: 45.13

Gene sequence:

>822_bases
ATGAACGGAAAGTACAAATACGTGACGATTGCTTCATTGCTGAGTGCAGCGGTCCTGCTTGGCACAGGATGTACCATGAC
CGAACAGAAGCAAAATGACACGGCTAAAACACAGAATACTGCAAATGCAAGCAAGGATGCAAAAGACCAAAAGTCAGACA
GCAGCCTGGAAGATCAGGACTTCATACTCGAGAGCAAGTACTTTAATCAAATAAAAGATGTAGACGGGCTGCCGACGATT
CAAAATCCGGAAAACATAATGGCGCTTGTAAATAAAGAATACGCGCTTCCCGGCAACTATGCACCGAGCGACCTGACAGT
GCCTGATGTCGCGTTTTCTTTTACCGAGGATATCGACAAGCGTTATATCAGAAAAGAAGCCGCCAAAGCGCTTGAAGAGA
TGTTCAGCGCCGCTAAGAAAGAAGGCTATGAACTCGTTGCAGTGTCCGGCTACAGATCCTATGACAGACAAAAAGCGATC
TATAACAACGAAGTCAGCCAAAAGGGAGAAGAAAAGGCGAAAGAAGCTGTGGCATATCCGGGCCAAAGCGAGCATCAGAC
AGGACTTGCGATGGATATTTCCAGCAAAAGCAACGGCTTCGCCTTATCAGAGGAATTCGGCAATACGAAAGACGGACAAT
GGGTCGAGAAGAACGCCTACAAATACGGCTATATCATCCGCTATCCGAAAAATAAAGAAGACATCACGAAATATAAGTAT
GAACCTTGGCACCTGCGCTATGTAGGAAAAAAAGCGGCTAAAGCCATCCAAGAACACGACTTGACGCTTGAAGAGTATTT
TAAACAGGTGAAAAAGATATAA

Upstream 100 bases:

>100_bases
AACGGCAGAAGAAAGACAGACGACCTTTAATGATATGATTCTGCTGGCTCTGGATACTGCTTTGTAAAAGCATACATGCA
CTGAAAAAGGATGGATTCGA

Downstream 100 bases:

>100_bases
AAATGAAAGGGCCGATATCAATCGGCCTTTTCATATTACCAAAAAAACAAGCCTGCAAGAGCCACACCGGCAATTAGACC
GAGGCCAAGTCCGTATACAG

Product: YodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNGKYKYVTIASLLSAAVLLGTGCTMTEQKQNDTAKTQNTANASKDAKDQKSDSSLEDQDFILESKYFNQIKDVDGLPTI
QNPENIMALVNKEYALPGNYAPSDLTVPDVAFSFTEDIDKRYIRKEAAKALEEMFSAAKKEGYELVAVSGYRSYDRQKAI
YNNEVSQKGEEKAKEAVAYPGQSEHQTGLAMDISSKSNGFALSEEFGNTKDGQWVEKNAYKYGYIIRYPKNKEDITKYKY
EPWHLRYVGKKAAKAIQEHDLTLEEYFKQVKKI

Sequences:

>Translated_273_residues
MNGKYKYVTIASLLSAAVLLGTGCTMTEQKQNDTAKTQNTANASKDAKDQKSDSSLEDQDFILESKYFNQIKDVDGLPTI
QNPENIMALVNKEYALPGNYAPSDLTVPDVAFSFTEDIDKRYIRKEAAKALEEMFSAAKKEGYELVAVSGYRSYDRQKAI
YNNEVSQKGEEKAKEAVAYPGQSEHQTGLAMDISSKSNGFALSEEFGNTKDGQWVEKNAYKYGYIIRYPKNKEDITKYKY
EPWHLRYVGKKAAKAIQEHDLTLEEYFKQVKKI
>Mature_273_residues
MNGKYKYVTIASLLSAAVLLGTGCTMTEQKQNDTAKTQNTANASKDAKDQKSDSSLEDQDFILESKYFNQIKDVDGLPTI
QNPENIMALVNKEYALPGNYAPSDLTVPDVAFSFTEDIDKRYIRKEAAKALEEMFSAAKKEGYELVAVSGYRSYDRQKAI
YNNEVSQKGEEKAKEAVAYPGQSEHQTGLAMDISSKSNGFALSEEFGNTKDGQWVEKNAYKYGYIIRYPKNKEDITKYKY
EPWHLRYVGKKAAKAIQEHDLTLEEYFKQVKKI

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30898; Mature: 30898

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKYKYVTIASLLSAAVLLGTGCTMTEQKQNDTAKTQNTANASKDAKDQKSDSSLEDQD
CCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCHHH
FILESKYFNQIKDVDGLPTIQNPENIMALVNKEYALPGNYAPSDLTVPDVAFSFTEDIDK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RYIRKEAAKALEEMFSAAKKEGYELVAVSGYRSYDRQKAIYNNEVSQKGEEKAKEAVAYP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
GQSEHQTGLAMDISSKSNGFALSEEFGNTKDGQWVEKNAYKYGYIIRYPKNKEDITKYKY
CCCCCCCCEEEEECCCCCCCEEHHHHCCCCCCCEECCCCEEEEEEEECCCCHHHHHHCCC
EPWHLRYVGKKAAKAIQEHDLTLEEYFKQVKKI
CCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNGKYKYVTIASLLSAAVLLGTGCTMTEQKQNDTAKTQNTANASKDAKDQKSDSSLEDQD
CCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCHHH
FILESKYFNQIKDVDGLPTIQNPENIMALVNKEYALPGNYAPSDLTVPDVAFSFTEDIDK
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RYIRKEAAKALEEMFSAAKKEGYELVAVSGYRSYDRQKAIYNNEVSQKGEEKAKEAVAYP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
GQSEHQTGLAMDISSKSNGFALSEEFGNTKDGQWVEKNAYKYGYIIRYPKNKEDITKYKY
CCCCCCCCEEEEECCCCCCCEEHHHHCCCCCCCEECCCCEEEEEEEECCCCHHHHHHCCC
EPWHLRYVGKKAAKAIQEHDLTLEEYFKQVKKI
CCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]