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The map label for this gene is ymfC [H]

Identifier: 52785666

GI number: 52785666

Start: 1867571

End: 1868296

Strand: Direct

Name: ymfC [H]

Synonym: BLi01907

Alternate gene names: 52785666

Gene position: 1867571-1868296 (Clockwise)

Preceding gene: 52785665

Following gene: 52785667

Centisome position: 44.23

GC content: 43.8

Gene sequence:

>726_bases
ATGTCGATAAAAGCTGACAATCAACGGTTATGTTTAAAGGTGATTGATCGGATAAAAGATGATATTCAAAATGGGGTCTT
TTGCGAAAATGAACGGCTCCCGAGTGAATTTGAGCTGTCAAAGATGCTTGGTGTGAGCAGAACGGCTTTGCGTGAGGCGC
TTAGAATACTGGAAGAAGAAAACGTCATCATCAGAAGGCATGGAGTCGGACATTTTGTAAATGCCAGACCGTTATTTCTA
TCAGGTATTGAGCAGCTGAACAGCGTCACAAAAATGATCGAGCAGGCAAGCATGACGCCGGGAACCATTTTTATGTCCTC
ACAGGTTACCGCTCCCACTGAAGAAGATATGCTCCGGTTTCAATATGCGGAAGAAACCGAGATCTTTTTGCTTGAGCGGG
TGAGAACGGCAAATGGAATGCCGGTTGTCTACTGTCTTGATAAAATACCTGTGGACATTCTCCCGGAAGGCTTTTCACAC
GAGCAGGAGTCGATGTTTGAATGGCTTGAGAACAAATCCGGCGCCGTGATCAGCTACGCTGTTGCCGATATTGTGCCAAT
CGGATATCATGACACCATTTCCCAAATTCTTGAATGCGATCCTGAAACGTCTTTGCTGCTGCTCAAACAGACTCATTATG
ACCAAAACGATAAGCCCGTTTTATATTCTTTAAACTATTTTAGGGCCGATAAATTCAGATTTCATGTCGTCAGAAAACGT
TTTTGA

Upstream 100 bases:

>100_bases
TGTAAACTAAAAAACATCTATTTATTTATTTGACAAAACATGATATAGTTATCCTCAATTAAAGATAATTTGAATCTGAT
CTGTCAGACGGAGGGAAAAC

Downstream 100 bases:

>100_bases
TATGCGGGCGCTCTATTAGGAGCGTGTTTTTTTTGCCCGCTTGAGCGCCTATACATAAATAAGCCCGCATCATGGAACAA
TAACAGATGGAAATACTGAT

Product: YmfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSIKADNQRLCLKVIDRIKDDIQNGVFCENERLPSEFELSKMLGVSRTALREALRILEEENVIIRRHGVGHFVNARPLFL
SGIEQLNSVTKMIEQASMTPGTIFMSSQVTAPTEEDMLRFQYAEETEIFLLERVRTANGMPVVYCLDKIPVDILPEGFSH
EQESMFEWLENKSGAVISYAVADIVPIGYHDTISQILECDPETSLLLLKQTHYDQNDKPVLYSLNYFRADKFRFHVVRKR
F

Sequences:

>Translated_241_residues
MSIKADNQRLCLKVIDRIKDDIQNGVFCENERLPSEFELSKMLGVSRTALREALRILEEENVIIRRHGVGHFVNARPLFL
SGIEQLNSVTKMIEQASMTPGTIFMSSQVTAPTEEDMLRFQYAEETEIFLLERVRTANGMPVVYCLDKIPVDILPEGFSH
EQESMFEWLENKSGAVISYAVADIVPIGYHDTISQILECDPETSLLLLKQTHYDQNDKPVLYSLNYFRADKFRFHVVRKR
F
>Mature_240_residues
SIKADNQRLCLKVIDRIKDDIQNGVFCENERLPSEFELSKMLGVSRTALREALRILEEENVIIRRHGVGHFVNARPLFLS
GIEQLNSVTKMIEQASMTPGTIFMSSQVTAPTEEDMLRFQYAEETEIFLLERVRTANGMPVVYCLDKIPVDILPEGFSHE
QESMFEWLENKSGAVISYAVADIVPIGYHDTISQILECDPETSLLLLKQTHYDQNDKPVLYSLNYFRADKFRFHVVRKRF

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=25.3164556962025, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790118, Length=235, Percent_Identity=23.8297872340426, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082252, Length=242, Percent_Identity=25.6198347107438, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=22.4137931034483, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27779; Mature: 27648

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKADNQRLCLKVIDRIKDDIQNGVFCENERLPSEFELSKMLGVSRTALREALRILEEE
CCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
NVIIRRHGVGHFVNARPLFLSGIEQLNSVTKMIEQASMTPGTIFMSSQVTAPTEEDMLRF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
QYAEETEIFLLERVRTANGMPVVYCLDKIPVDILPEGFSHEQESMFEWLENKSGAVISYA
HHCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEE
VADIVPIGYHDTISQILECDPETSLLLLKQTHYDQNDKPVLYSLNYFRADKFRFHVVRKR
HHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECHHCCCHHHHHHHHHC
F
C
>Mature Secondary Structure 
SIKADNQRLCLKVIDRIKDDIQNGVFCENERLPSEFELSKMLGVSRTALREALRILEEE
CCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
NVIIRRHGVGHFVNARPLFLSGIEQLNSVTKMIEQASMTPGTIFMSSQVTAPTEEDMLRF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
QYAEETEIFLLERVRTANGMPVVYCLDKIPVDILPEGFSHEQESMFEWLENKSGAVISYA
HHCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEE
VADIVPIGYHDTISQILECDPETSLLLLKQTHYDQNDKPVLYSLNYFRADKFRFHVVRKR
HHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECHHCCCHHHHHHHHHC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]