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The map label for this gene is glcT [H]

Identifier: 52785360

GI number: 52785360

Start: 1560933

End: 1561778

Strand: Direct

Name: glcT [H]

Synonym: BLi01597

Alternate gene names: 52785360

Gene position: 1560933-1561778 (Clockwise)

Preceding gene: 52785359

Following gene: 52785361

Centisome position: 36.97

GC content: 42.79

Gene sequence:

>846_bases
GTGAACAGATCCTTTACCGTTGAAAAGGTACTCAACAACAACGTTTTAATCGCTCTCCATGATGATTACAGAGAAGTTGT
CTTGATTGGCAAAGGAATCGGTTTTGGTAAAAAGCGCGGAGATCTTATCGAACATGAGAACTACGAAAAAATGTTTATCC
TGGAAAATGATAAGGAACAATCGCAGTATAAGAAGCTCCTCACTTATGTCGATGAAAAAATGGTTGATATCGCCAATGAT
GTCATCTACCATATCGCGCAAAAAATCGGCCAGCCGCTGAACGAACACATTCATGTCGCCCTGACGGACCATATCGCATT
TGCAGTTAAGCGTCTAGAAAAGGGATTTGATATGAAAAATCCGTTTTTGCTTGAGACGGAATCGCTTTATCCGAAGGAAT
ACGAAGTCGCCAAGGAAGCCGTCGATATGATTAATGAAAAATCCGACATTCAGCTGCCTGAAGGTGAAATCGGGTTCATC
GCGCTTCATATCCACAGTGCGATGACAAACCGCCCGCTTTCTGAAGTCAATCAGCATTCACAACTGATCTCCAGGCTTGT
CCAGGTCATCGAAGATTCATTCCAGATGCAAGTCAACAGGGAAAGCGTGAACTATTTGCGGCTGATCAGGCACTTGCGCT
TTACGATTGACAGGATAAAACGGGACGAGCCGATTCAGGAACCGGAAAAATTAATGTTGTTGTTGAAAACGGAATATCCG
CTGTGTTACAATACTGCTTGGAAGATGATCAAGATCTTGCAGCAAGCGCTCAAGAAACCGGTTCATGAGGCAGAAGCCGT
TTATTTGACATTGCATTTGTACCGTTTGACTAATAAAATTTCATAA

Upstream 100 bases:

>100_bases
AAAATTCGACATTTTTCATCAAAAACGTCAAAATAAATTGACGCGCTTTCATGAGTTTTGTACGATATGAGAGATTGATG
ACAAAAAGGAGCTGAGGATC

Downstream 100 bases:

>100_bases
CGCCTTTATAACGTGTTACTGATTCGATCAGGCATGAGTGAAAAAAGGGGAGAAATGAAGACGCTGTCTTTTGTTTCTTA
GTGTACCCGCTTTCACCATG

Product: GlcT

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNRSFTVEKVLNNNVLIALHDDYREVVLIGKGIGFGKKRGDLIEHENYEKMFILENDKEQSQYKKLLTYVDEKMVDIAND
VIYHIAQKIGQPLNEHIHVALTDHIAFAVKRLEKGFDMKNPFLLETESLYPKEYEVAKEAVDMINEKSDIQLPEGEIGFI
ALHIHSAMTNRPLSEVNQHSQLISRLVQVIEDSFQMQVNRESVNYLRLIRHLRFTIDRIKRDEPIQEPEKLMLLLKTEYP
LCYNTAWKMIKILQQALKKPVHEAEAVYLTLHLYRLTNKIS

Sequences:

>Translated_281_residues
MNRSFTVEKVLNNNVLIALHDDYREVVLIGKGIGFGKKRGDLIEHENYEKMFILENDKEQSQYKKLLTYVDEKMVDIAND
VIYHIAQKIGQPLNEHIHVALTDHIAFAVKRLEKGFDMKNPFLLETESLYPKEYEVAKEAVDMINEKSDIQLPEGEIGFI
ALHIHSAMTNRPLSEVNQHSQLISRLVQVIEDSFQMQVNRESVNYLRLIRHLRFTIDRIKRDEPIQEPEKLMLLLKTEYP
LCYNTAWKMIKILQQALKKPVHEAEAVYLTLHLYRLTNKIS
>Mature_281_residues
MNRSFTVEKVLNNNVLIALHDDYREVVLIGKGIGFGKKRGDLIEHENYEKMFILENDKEQSQYKKLLTYVDEKMVDIAND
VIYHIAQKIGQPLNEHIHVALTDHIAFAVKRLEKGFDMKNPFLLETESLYPKEYEVAKEAVDMINEKSDIQLPEGEIGFI
ALHIHSAMTNRPLSEVNQHSQLISRLVQVIEDSFQMQVNRESVNYLRLIRHLRFTIDRIKRDEPIQEPEKLMLLLKTEYP
LCYNTAWKMIKILQQALKKPVHEAEAVYLTLHLYRLTNKIS

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=271, Percent_Identity=30.9963099630996, Blast_Score=164, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32911; Mature: 32911

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSFTVEKVLNNNVLIALHDDYREVVLIGKGIGFGKKRGDLIEHENYEKMFILENDKEQ
CCCCEEHHHHHCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCHH
SQYKKLLTYVDEKMVDIANDVIYHIAQKIGQPLNEHIHVALTDHIAFAVKRLEKGFDMKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEHHHHHHHHHHHHHHCCCCCC
PFLLETESLYPKEYEVAKEAVDMINEKSDIQLPEGEIGFIALHIHSAMTNRPLSEVNQHS
CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEHHHHCCCHHHHHHHH
QLISRLVQVIEDSFQMQVNRESVNYLRLIRHLRFTIDRIKRDEPIQEPEKLMLLLKTEYP
HHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEHHCCCCC
LCYNTAWKMIKILQQALKKPVHEAEAVYLTLHLYRLTNKIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRSFTVEKVLNNNVLIALHDDYREVVLIGKGIGFGKKRGDLIEHENYEKMFILENDKEQ
CCCCEEHHHHHCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCHH
SQYKKLLTYVDEKMVDIANDVIYHIAQKIGQPLNEHIHVALTDHIAFAVKRLEKGFDMKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEHHHHHHHHHHHHHHCCCCCC
PFLLETESLYPKEYEVAKEAVDMINEKSDIQLPEGEIGFIALHIHSAMTNRPLSEVNQHS
CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEHHHHCCCHHHHHHHH
QLISRLVQVIEDSFQMQVNRESVNYLRLIRHLRFTIDRIKRDEPIQEPEKLMLLLKTEYP
HHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEHHCCCCC
LCYNTAWKMIKILQQALKKPVHEAEAVYLTLHLYRLTNKIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]