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The map label for this gene is lyc [H]

Identifier: 52785251

GI number: 52785251

Start: 1460028

End: 1460981

Strand: Direct

Name: lyc [H]

Synonym: BLi01486

Alternate gene names: 52785251

Gene position: 1460028-1460981 (Clockwise)

Preceding gene: 52785250

Following gene: 52785254

Centisome position: 34.58

GC content: 41.51

Gene sequence:

>954_bases
ATGGGAATCAAAGGAATCGACGTATCACACTGGCAAGGTAATATCAATTGGAAGAAAGTTGCGGGGGACGGTATTAAATT
CGCTTTTATCAAAGCAACAGAAGGGACAACATTACAGGACAATAAATTTGTAACGAATATTTCAGGTGCTAACGCTGTGG
GGATTAAAACGGGAGCCTACCACTTTGCAAGATTCGGTTCCAAGTCAGAAGCATTGGCAGAGGCCAGGTTCTTTTTGTCA
GTTGCAAATAAGGTCCATCTCACGTATCCGCTTGTGCTTGATCTTGAAGTTAATCAGCGGAATGTCAGTAAATCAGTTTT
GACAGATGCAGCAGTGGCCTTTTTACGGGAAGTTGAAAAAGCTGGTTACTTCGCCATGATATACAGCGGTAAGTCTTTCC
TTGAGAATTGCCTTGACGAATCCAAGCTGAAGCCATTTGCATTATGGGTTGCTCGTTATAACAACACACTTGGCCGTCAT
GCAGATATCTGGCAGTATTCTGATTGTGGAAGGGTCGCCGGTATTTCTGGGAATGTTGATATGAATATTTGTTATCGTGA
CGGGTTACGGGCTCAGGTAGCCGTGACAACTGAAAAAGCTGCTACTGTAAAACCTGTTTCAAACAAAAAGCCAGTTAAAA
CGGAGACAGTTTACACAGTCAAAAAAGGGGACACGCTTTCGGAAATCGCACAGAAAAACAACACGACCGTTAAAGCTCTC
CAAAATTTGAATAACATTAAAGATGCGAATAAGATTTACGTTGGCCAGAAATTAAAGATTAGCGGCAGTCCTTCAACAGC
ATCGAATAAAAAGCAATATTACACCATTAAATCCGGTGACACTTTGTCTGGGATCTCGAAAAGGTTTAATACATCCATTA
AGACGCTGCAAGCTTGGAATGGTATCAAGAATGCCAACAAGATTTACGCTGGTCAGAAAATTCGTGTTAGATAA

Upstream 100 bases:

>100_bases
GCAAAGGAAAGCAGCAAAAAGAAGTTCTAAAACAAAAAGGGTTAACGAAATGAGGTTGCCGGCTGGCAGCCTTTTAATAA
TTTAAAGGAGGATTTTAATA

Downstream 100 bases:

>100_bases
CGAAATGGGATTACAACATAAAACTAAAGCAGGCATTCGGCCTGCTTTTTTGATTAATTTTATTTCTGAAAAGATCTGTT
TTCTGTATCAACTTATTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MGIKGIDVSHWQGNINWKKVAGDGIKFAFIKATEGTTLQDNKFVTNISGANAVGIKTGAYHFARFGSKSEALAEARFFLS
VANKVHLTYPLVLDLEVNQRNVSKSVLTDAAVAFLREVEKAGYFAMIYSGKSFLENCLDESKLKPFALWVARYNNTLGRH
ADIWQYSDCGRVAGISGNVDMNICYRDGLRAQVAVTTEKAATVKPVSNKKPVKTETVYTVKKGDTLSEIAQKNNTTVKAL
QNLNNIKDANKIYVGQKLKISGSPSTASNKKQYYTIKSGDTLSGISKRFNTSIKTLQAWNGIKNANKIYAGQKIRVR

Sequences:

>Translated_317_residues
MGIKGIDVSHWQGNINWKKVAGDGIKFAFIKATEGTTLQDNKFVTNISGANAVGIKTGAYHFARFGSKSEALAEARFFLS
VANKVHLTYPLVLDLEVNQRNVSKSVLTDAAVAFLREVEKAGYFAMIYSGKSFLENCLDESKLKPFALWVARYNNTLGRH
ADIWQYSDCGRVAGISGNVDMNICYRDGLRAQVAVTTEKAATVKPVSNKKPVKTETVYTVKKGDTLSEIAQKNNTTVKAL
QNLNNIKDANKIYVGQKLKISGSPSTASNKKQYYTIKSGDTLSGISKRFNTSIKTLQAWNGIKNANKIYAGQKIRVR
>Mature_316_residues
GIKGIDVSHWQGNINWKKVAGDGIKFAFIKATEGTTLQDNKFVTNISGANAVGIKTGAYHFARFGSKSEALAEARFFLSV
ANKVHLTYPLVLDLEVNQRNVSKSVLTDAAVAFLREVEKAGYFAMIYSGKSFLENCLDESKLKPFALWVARYNNTLGRHA
DIWQYSDCGRVAGISGNVDMNICYRDGLRAQVAVTTEKAATVKPVSNKKPVKTETVYTVKKGDTLSEIAQKNNTTVKALQ
NLNNIKDANKIYVGQKLKISGSPSTASNKKQYYTIKSGDTLSGISKRFNTSIKTLQAWNGIKNANKIYAGQKIRVR

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=191, Percent_Identity=37.696335078534, Blast_Score=104, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 34893; Mature: 34762

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00953 GLYCOSYL_HYDROL_F25

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKGIDVSHWQGNINWKKVAGDGIKFAFIKATEGTTLQDNKFVTNISGANAVGIKTGAY
CCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEECCCEEEECCCCCEEEEECCCH
HFARFGSKSEALAEARFFLSVANKVHLTYPLVLDLEVNQRNVSKSVLTDAAVAFLREVEK
HHHHCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AGYFAMIYSGKSFLENCLDESKLKPFALWVARYNNTLGRHADIWQYSDCGRVAGISGNVD
CCEEEEEECCHHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCCEEECCCCCEEECCCCCE
MNICYRDGLRAQVAVTTEKAATVKPVSNKKPVKTETVYTVKKGDTLSEIAQKNNTTVKAL
EEEEECCCCEEEEEEEECCCEEECCCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHH
QNLNNIKDANKIYVGQKLKISGSPSTASNKKQYYTIKSGDTLSGISKRFNTSIKTLQAWN
HHHHHCCCCCEEEECEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHC
GIKNANKIYAGQKIRVR
CCCCCCEEECCCEEEEC
>Mature Secondary Structure 
GIKGIDVSHWQGNINWKKVAGDGIKFAFIKATEGTTLQDNKFVTNISGANAVGIKTGAY
CCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEECCCEEEECCCCCEEEEECCCH
HFARFGSKSEALAEARFFLSVANKVHLTYPLVLDLEVNQRNVSKSVLTDAAVAFLREVEK
HHHHCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AGYFAMIYSGKSFLENCLDESKLKPFALWVARYNNTLGRHADIWQYSDCGRVAGISGNVD
CCEEEEEECCHHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCCEEECCCCCEEECCCCCE
MNICYRDGLRAQVAVTTEKAATVKPVSNKKPVKTETVYTVKKGDTLSEIAQKNNTTVKAL
EEEEECCCCEEEEEEEECCCEEECCCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHH
QNLNNIKDANKIYVGQKLKISGSPSTASNKKQYYTIKSGDTLSGISKRFNTSIKTLQAWN
HHHHHCCCCCEEEECEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHC
GIKNANKIYAGQKIRVR
CCCCCCEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]