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The map label for this gene is ydfS [H]

Identifier: 52785254

GI number: 52785254

Start: 1462910

End: 1463620

Strand: Direct

Name: ydfS [H]

Synonym: BLi01489

Alternate gene names: 52785254

Gene position: 1462910-1463620 (Clockwise)

Preceding gene: 52785251

Following gene: 52785256

Centisome position: 34.64

GC content: 33.19

Gene sequence:

>711_bases
ATGAGTGAACATATTGAAGTAATCCTTCGATCGATTCTTGCCTTTGGTATTTTATTGGTAGGATCAAGATTGTTGGGAAA
ACAAACAATTTCACAAATGAATATCTTTGATTTTATTGCATCAATTACATTAGGCGCTATTACTGCAAATCTGGCTTTTA
ATACCTCTCTTAAAATTCATCACATGGTACTGGCTTTTTTTATATTTGTTTTTGTGATCTTAGCCACTGCGTATATATCC
CTTTGGAGTCAAAAAGGCCGCAAATTTTTTGCCGGTGATCCAACTGTTGTGATTCAAAATGGAAAAGTTCTTGAACACAA
CATGCGAAAAATGCGTTATACAATTGATTATTTGAATCAACAACTTAGAGAAAAGAATGTATTCAAAATCGAAGAAGTAC
TCTATGCCATTGTTGAAACAAATGGGACCTTAACAGTATTAAAAAAACCACAATTCCGAAATGTGACAAAAAAGGATTTG
TGGGTTGCCACTACGCCAGAAGGAAAACTCCCGATTGAATTAATCATGGATGGGAAAATGAAGAATGAAAACTTGAAAGA
TAATCAACTCACTCAGGCATGGTTACAATCTGAGATGAAAAAGCGTGGTCTATCCACAGATGAAGTTTTTTATGCAGTAT
TATCACCTGATGGAAATATCTATATAGATACATATGAAGATCATATACATTCTTCTTTTGATAAAGAATAA

Upstream 100 bases:

>100_bases
ACAATGAGTGCATGTATATGTGTCTAACCATTATTTCAGTATATATAAGATCTCTTTTGTCTATGATGTTTTTAGACGAT
ACAATAAGTTGGTGAAATCT

Downstream 100 bases:

>100_bases
ATGATTTCAGCATTCTGTAAATACATTTTGAATGTATTAGTGACTACATGTTTTAGTGGAAAACTGTTGGCGGATTGTTG
TCTAACCCTACCAACAATCA

Product: YdfS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSEHIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIHHMVLAFFIFVFVILATAYIS
LWSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQQLREKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDL
WVATTPEGKLPIELIMDGKMKNENLKDNQLTQAWLQSEMKKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE

Sequences:

>Translated_236_residues
MSEHIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIHHMVLAFFIFVFVILATAYIS
LWSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQQLREKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDL
WVATTPEGKLPIELIMDGKMKNENLKDNQLTQAWLQSEMKKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE
>Mature_235_residues
SEHIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIHHMVLAFFIFVFVILATAYISL
WSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQQLREKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDLW
VATTPEGKLPIELIMDGKMKNENLKDNQLTQAWLQSEMKKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family [H]

Homologues:

Organism=Escherichia coli, GI1787135, Length=141, Percent_Identity=24.822695035461, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007353
- InterPro:   IPR023090 [H]

Pfam domain/function: PF04239 DUF421 [H]

EC number: NA

Molecular weight: Translated: 27037; Mature: 26906

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHH
HMVLAFFIFVFVILATAYISLWSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCEEHHHHHHHHHHHHHHHHH
QLREKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDLWVATTPEGKLPIELIMDGKM
HHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCC
KNENLKDNQLTQAWLQSEMKKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE
CCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCEEEECCHHHHHHCCCCC
>Mature Secondary Structure 
SEHIEVILRSILAFGILLVGSRLLGKQTISQMNIFDFIASITLGAITANLAFNTSLKIH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHH
HMVLAFFIFVFVILATAYISLWSQKGRKFFAGDPTVVIQNGKVLEHNMRKMRYTIDYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCEEHHHHHHHHHHHHHHHHH
QLREKNVFKIEEVLYAIVETNGTLTVLKKPQFRNVTKKDLWVATTPEGKLPIELIMDGKM
HHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCC
KNENLKDNQLTQAWLQSEMKKRGLSTDEVFYAVLSPDGNIYIDTYEDHIHSSFDKE
CCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCEEEECCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]