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The map label for this gene is yurK [H]

Identifier: 52784158

GI number: 52784158

Start: 310734

End: 311462

Strand: Direct

Name: yurK [H]

Synonym: BLi00336

Alternate gene names: 52784158

Gene position: 310734-311462 (Clockwise)

Preceding gene: 52784151

Following gene: 52784159

Centisome position: 7.36

GC content: 44.44

Gene sequence:

>729_bases
ATGGCGAAACAACCACAGCTCCACAGTCAAATTAAACAAGATATTGTAGATAAGATTGAAAGCGGTTATTATCCGCCGGG
CAGCCTGTTGCCGACGGAGTCCGAGTTTTGCAAAATTTATGATGTCAGCCGGACGACGCTGCGGACCGCGCTGAATCATT
TGCTTATGGAAGGGGCTATTTACCGAAAGCAGGGAAAAGGGACATTTGTCGCCAAAGGAAAAGTAAAGCAGATCTTAAGC
TCCAGCAGCCTCCGCTATGCAGAACAATTGAAGGCTCAAGGCTTTAAACCGAAAATCAAGGTTGTTGATTTGCAAAAAAT
AAAGCCGTCCGAAAAACTCCAAACCCGTCTCGGAATCGACGCTGAACAAATGGTCTATCAAGTAAAAAGAATCCGCTATG
CAGACGATGAAGAAATCCAGTTTGAAACAGCCTATATCAGAACGGATCTCGTACCCGAAGTAACGGAAGAAATGGCGAAT
ATCTCACTTTACCAGTGCATCAGCAGGCAGGGAAACAACATTAAAAGAACAGAGGAGCAAATCAAGATTGTGATTTCTGA
TGAGGAGATTGCACACCATTTAAATATTACACAAGGCACGCCTTGCTTCCAGATATCGACGCAAACATTTTTGGCGTCTG
AAGAGGTTGTCGAGTATTCTATGGCCTATTTTCGCGGTGACCGCGTTGAGTTCTTCATTGAACGCGATTATGGACAAAGG
GGGAAATGA

Upstream 100 bases:

>100_bases
TAACAAATTTGTCCATACATATTTGTTATAACAAATTGTTTTTTGGGGGAACTTTTTGTGTTATTCTATAATTACGAACT
CACCCCAAAGGAGAAAATGT

Downstream 100 bases:

>100_bases
AAGCGTGAAATCTCTAATCATAAATGCAGATGATTTTGGATTTTCAAGGGGAGTCAACCTTGGCATTATTGAAGCTTTCC
AGCACGGGGTCCTCACATCG

Product: YurK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MAKQPQLHSQIKQDIVDKIESGYYPPGSLLPTESEFCKIYDVSRTTLRTALNHLLMEGAIYRKQGKGTFVAKGKVKQILS
SSSLRYAEQLKAQGFKPKIKVVDLQKIKPSEKLQTRLGIDAEQMVYQVKRIRYADDEEIQFETAYIRTDLVPEVTEEMAN
ISLYQCISRQGNNIKRTEEQIKIVISDEEIAHHLNITQGTPCFQISTQTFLASEEVVEYSMAYFRGDRVEFFIERDYGQR
GK

Sequences:

>Translated_242_residues
MAKQPQLHSQIKQDIVDKIESGYYPPGSLLPTESEFCKIYDVSRTTLRTALNHLLMEGAIYRKQGKGTFVAKGKVKQILS
SSSLRYAEQLKAQGFKPKIKVVDLQKIKPSEKLQTRLGIDAEQMVYQVKRIRYADDEEIQFETAYIRTDLVPEVTEEMAN
ISLYQCISRQGNNIKRTEEQIKIVISDEEIAHHLNITQGTPCFQISTQTFLASEEVVEYSMAYFRGDRVEFFIERDYGQR
GK
>Mature_241_residues
AKQPQLHSQIKQDIVDKIESGYYPPGSLLPTESEFCKIYDVSRTTLRTALNHLLMEGAIYRKQGKGTFVAKGKVKQILSS
SSLRYAEQLKAQGFKPKIKVVDLQKIKPSEKLQTRLGIDAEQMVYQVKRIRYADDEEIQFETAYIRTDLVPEVTEEMANI
SLYQCISRQGNNIKRTEEQIKIVISDEEIAHHLNITQGTPCFQISTQTFLASEEVVEYSMAYFRGDRVEFFIERDYGQRG
K

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=230, Percent_Identity=29.1304347826087, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=30.4721030042918, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1788418, Length=236, Percent_Identity=26.271186440678, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790118, Length=238, Percent_Identity=23.109243697479, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790540, Length=240, Percent_Identity=23.75, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27857; Mature: 27726

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQPQLHSQIKQDIVDKIESGYYPPGSLLPTESEFCKIYDVSRTTLRTALNHLLMEGAI
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEECHHHHHHHHHHHHHHHHHH
YRKQGKGTFVAKGKVKQILSSSSLRYAEQLKAQGFKPKIKVVDLQKIKPSEKLQTRLGID
EEECCCEEEEECHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHCCC
AEQMVYQVKRIRYADDEEIQFETAYIRTDLVPEVTEEMANISLYQCISRQGNNIKRTEEQ
HHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
IKIVISDEEIAHHLNITQGTPCFQISTQTFLASEEVVEYSMAYFRGDRVEFFIERDYGQR
EEEEECCHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
GK
CC
>Mature Secondary Structure 
AKQPQLHSQIKQDIVDKIESGYYPPGSLLPTESEFCKIYDVSRTTLRTALNHLLMEGAI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEECHHHHHHHHHHHHHHHHHH
YRKQGKGTFVAKGKVKQILSSSSLRYAEQLKAQGFKPKIKVVDLQKIKPSEKLQTRLGID
EEECCCEEEEECHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHCCC
AEQMVYQVKRIRYADDEEIQFETAYIRTDLVPEVTEEMANISLYQCISRQGNNIKRTEEQ
HHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
IKIVISDEEIAHHLNITQGTPCFQISTQTFLASEEVVEYSMAYFRGDRVEFFIERDYGQR
EEEEECCHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
GK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]