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The map label for this gene is xylF [H]

Identifier: 52784084

GI number: 52784084

Start: 233022

End: 234086

Strand: Direct

Name: xylF [H]

Synonym: BLi00260

Alternate gene names: 52784084

Gene position: 233022-234086 (Clockwise)

Preceding gene: 52784083

Following gene: 52784087

Centisome position: 5.52

GC content: 49.48

Gene sequence:

>1065_bases
ATGTTGTCGATATATGTGAAAAGAGGGCTGTTGGCACTTGCGCTGTTCAGTCTCCTCACAGCTGTTGCCGGGTGCTCATT
CAATTCTGCTGAAAAAAGCGCCAACCGTGAAGAAAAAGTAAAGCTGATTGCCGACTCCGACAAATTGTACGTCGGTTTTG
CCATCGATACGCTGAAGGAAGAACGCTGGTACAAAGATAAAGAAGCGTTCGAGAAAGAAGTTAAAAACCTCGGGGGGGAA
GTCAAGACGCTTGCCGCTAACGGAAATAAAGAAGTTCAGATTCAGCAGGCCGAGCTCTTGATCAGCGAAGGCGTCGACGT
GCTTGTTGTTGTACCGGCAGATGCGGATGCCGCGGCGGAGATCGTGAAAAAGGCGCACAGCGCCGGTGTAAAAGTGATTT
CGTATGACCGGCTGATTCGAAACGCGGATGTTGATTATTACGTTTCATTTGATAACGAAAAGGTCGGGGAACTGCAGGCG
GAAGCGATTGTAAAAAAAGCGAAGAAAGGAAACTTCGTATATATCGGCGGATCGTCTCTTGACAACAATGCGGTCTTATT
CCGGAACGGCGCCATGAAAGTGCTCGAACCGTTGAAGCGGCAGGGTAAAGTCAAGCTCGTGCTTGACGAATATACGAAAG
ACTGGCTACCAGAAGAAGCGAAAAAGAACATGAAAAAAGCATTGAACAAGACGAGAGATATCGACGCCGTGATCGCCGCC
AATGACGGTACGGCTGGCGGGGTGATCGAGGCGCTTCAGGAGGCGGGCCTGGCCGGGAAAATTCCGGTGTCCGGACAGGA
CGCGGAAATTCAAGGCGTCCGACGAATTGTGAACGGTACGCAGACGATGACCGTTTACAAACCGATTCCCGCGCTTGCCA
AAAAAAGCGCTGAAATGGCTGTTCAAGCGGCGAAAGGCGAAGCGATTCAAACCGATACAACCGTCGAAAACGGCAAAGCC
AAAGTACCGGCGATTTTACTTGAGCCGTATGCCGTTACGAAAGGCAATATCAATGAGACTGTGATCAAAGACGGCCATCT
GTCCAAAAAAGATATTAATAAATAA

Upstream 100 bases:

>100_bases
ATGGACGAAAGCGCAAGGCTTCTGGGAGAGATGGTTGAACGGATGAATGTGATGATCAAACGGTTTAAGCTCTGATGCCG
ATACAGAATGGGGGGTTTTA

Downstream 100 bases:

>100_bases
AACGAAGTCAGCCATCCGCTACAGGATGGCTGACTTTGTTAAATTTCCACTTTCACATCGGCGCTTTTCTTAAGCTTTTC
GACCTGCTGTCCGAGTTTTT

Product: hypothetical protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLSIYVKRGLLALALFSLLTAVAGCSFNSAEKSANREEKVKLIADSDKLYVGFAIDTLKEERWYKDKEAFEKEVKNLGGE
VKTLAANGNKEVQIQQAELLISEGVDVLVVVPADADAAAEIVKKAHSAGVKVISYDRLIRNADVDYYVSFDNEKVGELQA
EAIVKKAKKGNFVYIGGSSLDNNAVLFRNGAMKVLEPLKRQGKVKLVLDEYTKDWLPEEAKKNMKKALNKTRDIDAVIAA
NDGTAGGVIEALQEAGLAGKIPVSGQDAEIQGVRRIVNGTQTMTVYKPIPALAKKSAEMAVQAAKGEAIQTDTTVENGKA
KVPAILLEPYAVTKGNINETVIKDGHLSKKDINK

Sequences:

>Translated_354_residues
MLSIYVKRGLLALALFSLLTAVAGCSFNSAEKSANREEKVKLIADSDKLYVGFAIDTLKEERWYKDKEAFEKEVKNLGGE
VKTLAANGNKEVQIQQAELLISEGVDVLVVVPADADAAAEIVKKAHSAGVKVISYDRLIRNADVDYYVSFDNEKVGELQA
EAIVKKAKKGNFVYIGGSSLDNNAVLFRNGAMKVLEPLKRQGKVKLVLDEYTKDWLPEEAKKNMKKALNKTRDIDAVIAA
NDGTAGGVIEALQEAGLAGKIPVSGQDAEIQGVRRIVNGTQTMTVYKPIPALAKKSAEMAVQAAKGEAIQTDTTVENGKA
KVPAILLEPYAVTKGNINETVIKDGHLSKKDINK
>Mature_354_residues
MLSIYVKRGLLALALFSLLTAVAGCSFNSAEKSANREEKVKLIADSDKLYVGFAIDTLKEERWYKDKEAFEKEVKNLGGE
VKTLAANGNKEVQIQQAELLISEGVDVLVVVPADADAAAEIVKKAHSAGVKVISYDRLIRNADVDYYVSFDNEKVGELQA
EAIVKKAKKGNFVYIGGSSLDNNAVLFRNGAMKVLEPLKRQGKVKLVLDEYTKDWLPEEAKKNMKKALNKTRDIDAVIAA
NDGTAGGVIEALQEAGLAGKIPVSGQDAEIQGVRRIVNGTQTMTVYKPIPALAKKSAEMAVQAAKGEAIQTDTTVENGKA
KVPAILLEPYAVTKGNINETVIKDGHLSKKDINK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=304, Percent_Identity=51.3157894736842, Blast_Score=316, Evalue=2e-87,
Organism=Escherichia coli, GI1790192, Length=271, Percent_Identity=26.9372693726937, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790526, Length=274, Percent_Identity=27.3722627737226, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38288; Mature: 38288

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIYVKRGLLALALFSLLTAVAGCSFNSAEKSANREEKVKLIADSDKLYVGFAIDTLKE
CEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCCEEEEEEHHHHHH
ERWYKDKEAFEKEVKNLGGEVKTLAANGNKEVQIQQAELLISEGVDVLVVVPADADAAAE
HHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCCEEEEEECCCHHHHH
IVKKAHSAGVKVISYDRLIRNADVDYYVSFDNEKVGELQAEAIVKKAKKGNFVYIGGSSL
HHHHHHHCCCEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC
DNNAVLFRNGAMKVLEPLKRQGKVKLVLDEYTKDWLPEEAKKNMKKALNKTRDIDAVIAA
CCCEEEEECCCHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE
NDGTAGGVIEALQEAGLAGKIPVSGQDAEIQGVRRIVNGTQTMTVYKPIPALAKKSAEMA
CCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
VQAAKGEAIQTDTTVENGKAKVPAILLEPYAVTKGNINETVIKDGHLSKKDINK
HHHHCCCEEECCCCCCCCCCCCCEEEECCEEECCCCCCCEEEECCCCCHHCCCC
>Mature Secondary Structure
MLSIYVKRGLLALALFSLLTAVAGCSFNSAEKSANREEKVKLIADSDKLYVGFAIDTLKE
CEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCCEEEEEEHHHHHH
ERWYKDKEAFEKEVKNLGGEVKTLAANGNKEVQIQQAELLISEGVDVLVVVPADADAAAE
HHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCCEEEEEECCCHHHHH
IVKKAHSAGVKVISYDRLIRNADVDYYVSFDNEKVGELQAEAIVKKAKKGNFVYIGGSSL
HHHHHHHCCCEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC
DNNAVLFRNGAMKVLEPLKRQGKVKLVLDEYTKDWLPEEAKKNMKKALNKTRDIDAVIAA
CCCEEEEECCCHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE
NDGTAGGVIEALQEAGLAGKIPVSGQDAEIQGVRRIVNGTQTMTVYKPIPALAKKSAEMA
CCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
VQAAKGEAIQTDTTVENGKAKVPAILLEPYAVTKGNINETVIKDGHLSKKDINK
HHHHCCCEEECCCCCCCCCCCCCEEEECCEEECCCCCCCEEEECCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]