Click here to switch to the map view.

The map label for this gene is ybbH [H]

Identifier: 52784023

GI number: 52784023

Start: 173661

End: 174509

Strand: Reverse

Name: ybbH [H]

Synonym: BLi00190

Alternate gene names: 52784023

Gene position: 174509-173661 (Counterclockwise)

Preceding gene: 52784024

Following gene: 52784022

Centisome position: 4.13

GC content: 47.23

Gene sequence:

>849_bases
ATGGCTGCAGGAGGATTGGAAATCATTCAGAATATGCTTCACAAATTGCCGCAATCTGAACGAAAGCTTGCCGAATACAT
TTTGAAAAACCCCCACGAGATCGTAAACGGCACCATTCAGGAGGTGAGCTCTTCGGCAAAGACAAGCGGGGCGGCGGCGA
TACGGCTCTGCAAATCTTTGGGGCTGAAAGGCTTTCAAGATTTAAAAATGAGAGTCGCCGGTGATTTAATGAAGCCGTCT
GATCAGGGATACCGGGATATCGAACCGCAGGAGCCGCTCCATTCAATCGTTCAAAAAACAACCAGCAATTCGATTCAGGC
GATTCGCGATACCTTTGAAAACATTGACCACGAAGAACTTCAAAAAGCGATTCAAATATTGATCAACGCAGAAACGGTTC
ATTTTTGCGGGATCGGGGCTTCAGGAATCGTCGCACAAGACGCCCAGCAGAAATTTTTGCGCATCAATAAAAAGGCCACC
GCTTTTAGTGATATGCATCTTGTTGCGACATTAATCGCCAATGCCGGCGAGAATGACGTTCTGTTTGCTATATCCCATTC
AGGAGAAACACAGGAAATCGCCAATGCAGTCAGGCTCGCCAAAAAACATGGTATTAAAACCATTGGGCTGACGCGGTTGG
GACAGTCTGCTGTCGCTTCATTAAGCGATATCGCCCTGTATACGTCATGCTCAAATGAAGCGCCGTTTCGCAGCGCCGCC
ACCTCCTCTCGTTTAACTCAGCTTTACATGATTGACTTACTGTTTTTAGGCATGGCCGCAGAGCGCTACGAGGACATCAT
TCAGTATATTGATCAAACAAAAGCGGCCATCCGCATGATGGGAATTTAG

Upstream 100 bases:

>100_bases
AGATGCAGCCGCTGCAGAAAAACTGCTGGAGAAATCAGAAGGCGATATTGAAAAGGCCCTATCCATTTATGAAAAATCTT
AAATAAGAAAGGAAGAAACA

Downstream 100 bases:

>100_bases
CGAATTGTAAAAAAGGGGGATATAAAATGAGCGATGAGAAAAAATATGCCGGGCTGGCAAGACTGATTTTACAACACATC
GGCGGCCCGTCTAACGTCGC

Product: YbbH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MAAGGLEIIQNMLHKLPQSERKLAEYILKNPHEIVNGTIQEVSSSAKTSGAAAIRLCKSLGLKGFQDLKMRVAGDLMKPS
DQGYRDIEPQEPLHSIVQKTTSNSIQAIRDTFENIDHEELQKAIQILINAETVHFCGIGASGIVAQDAQQKFLRINKKAT
AFSDMHLVATLIANAGENDVLFAISHSGETQEIANAVRLAKKHGIKTIGLTRLGQSAVASLSDIALYTSCSNEAPFRSAA
TSSRLTQLYMIDLLFLGMAAERYEDIIQYIDQTKAAIRMMGI

Sequences:

>Translated_282_residues
MAAGGLEIIQNMLHKLPQSERKLAEYILKNPHEIVNGTIQEVSSSAKTSGAAAIRLCKSLGLKGFQDLKMRVAGDLMKPS
DQGYRDIEPQEPLHSIVQKTTSNSIQAIRDTFENIDHEELQKAIQILINAETVHFCGIGASGIVAQDAQQKFLRINKKAT
AFSDMHLVATLIANAGENDVLFAISHSGETQEIANAVRLAKKHGIKTIGLTRLGQSAVASLSDIALYTSCSNEAPFRSAA
TSSRLTQLYMIDLLFLGMAAERYEDIIQYIDQTKAAIRMMGI
>Mature_281_residues
AAGGLEIIQNMLHKLPQSERKLAEYILKNPHEIVNGTIQEVSSSAKTSGAAAIRLCKSLGLKGFQDLKMRVAGDLMKPSD
QGYRDIEPQEPLHSIVQKTTSNSIQAIRDTFENIDHEELQKAIQILINAETVHFCGIGASGIVAQDAQQKFLRINKKATA
FSDMHLVATLIANAGENDVLFAISHSGETQEIANAVRLAKKHGIKTIGLTRLGQSAVASLSDIALYTSCSNEAPFRSAAT
SSRLTQLYMIDLLFLGMAAERYEDIIQYIDQTKAAIRMMGI

Specific function: Represses The Expression Of The Hex Regulon (Zwf, Eda, Glp And Gap) (By Similarity). [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788159, Length=273, Percent_Identity=27.8388278388278, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082369, Length=251, Percent_Identity=28.2868525896414, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082130, Length=280, Percent_Identity=27.8571428571429, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788767, Length=257, Percent_Identity=26.8482490272374, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30784; Mature: 30653

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGGLEIIQNMLHKLPQSERKLAEYILKNPHEIVNGTIQEVSSSAKTSGAAAIRLCKSL
CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GLKGFQDLKMRVAGDLMKPSDQGYRDIEPQEPLHSIVQKTTSNSIQAIRDTFENIDHEEL
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
QKAIQILINAETVHFCGIGASGIVAQDAQQKFLRINKKATAFSDMHLVATLIANAGENDV
HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE
LFAISHSGETQEIANAVRLAKKHGIKTIGLTRLGQSAVASLSDIALYTSCSNEAPFRSAA
EEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHH
TSSRLTQLYMIDLLFLGMAAERYEDIIQYIDQTKAAIRMMGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAGGLEIIQNMLHKLPQSERKLAEYILKNPHEIVNGTIQEVSSSAKTSGAAAIRLCKSL
CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GLKGFQDLKMRVAGDLMKPSDQGYRDIEPQEPLHSIVQKTTSNSIQAIRDTFENIDHEEL
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
QKAIQILINAETVHFCGIGASGIVAQDAQQKFLRINKKATAFSDMHLVATLIANAGENDV
HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE
LFAISHSGETQEIANAVRLAKKHGIKTIGLTRLGQSAVASLSDIALYTSCSNEAPFRSAA
EEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHH
TSSRLTQLYMIDLLFLGMAAERYEDIIQYIDQTKAAIRMMGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]