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The map label for this gene is ydiU [C]

Identifier: 52142021

GI number: 52142021

Start: 3343536

End: 3345002

Strand: Direct

Name: ydiU [C]

Synonym: BCZK3222

Alternate gene names: 52142021

Gene position: 3343536-3345002 (Clockwise)

Preceding gene: 52142023

Following gene: 52142020

Centisome position: 63.07

GC content: 40.35

Gene sequence:

>1467_bases
ATGACTAAAAATAATGAAGCTGGTTGGAATTTAGACCATAGTTATACGACTTTACCACAATCATTTTATACAGAAATCCC
CCCTACTCCCGTAAGTTCACCGGAGTTAGTTAAGCTAAACCATTCACTTGCGATATCTCTTGGCTTTCATCCTGAAGAAT
TGAAGAAAGAAGCCGAAATCGCTATTTTCGCCGGTAATGCACTCCCAGAAGGAGCTCATCCATTAGCGCAAGCGTATGCT
GGACATCAATTCGGACATTTTAATATGTTAGGCGACGGTCGTGCTCTTTTAATTGGTGAACAAATTACTCCTTCAGGTAA
ACGTTTTGACATTCAGCTAAAAGGTTCTGGCCCTACTCCGTATTCACGCCGCGGTGATGGTCGTGCTGCACTCGGTCCGA
TGCTACGTGAATATATTATTAGCGAAGCAATGTATGCACTTGATATTCCAACTACCCGCAGTTTAGCAGTTGTCACAACT
GGAGAACCTACATACCGTGAAACAAAGTTACCTGGAGCTATTTTAACTAGAGTAGCAAGTAGCCATATACGCGTCGGCAC
ATTTCAATATGCTGCAGCTCGCGGTTCTATCGAGGATCTTCAATCACTAGCTGACTATACAATAAAAAGGCATTATCCAG
AAATTGAAGCTCATGAAAATCGATATACTGCATTGCTACAAGAAGTCATAAAGAAACAAGCAAGCCTCATCGCTAAATGG
CAACTTGTTGGATTTATCCACGGTGTAATGAACACTGACAATATAACAATTAGCGGAGAAACAATTGATTACGGTCCTTG
TGCATTTATGGACAATTACGACCAAGGAACCGTATTTAGCTCCATTGATACACAAGGCCGCTACGCATATGGAAATCAGC
CGTATATGGCCGCATGGGATCTCGCGCGACTAGCTGAATCTTTAATACCAATCCTACACGAAGATGAAGAAGAAGCATTA
AAGATTGCTCAAGACGAAATTTCAAAATTTAGCGTACAGTATGAAAACCAGTGGTTCCTTGGAATGAAAAAGAAATTAGG
ACTATTTAGCAACGAAGAACAAGATCAATCACTTATTGAGCAACTTTTAAAAATGATGGAGAAATTTAAAGCGGATTACA
CAAATACATTCCGTTCATTAACTCTTAATACGATCGAAAATACAGCTCTATTTGAAAGTCCTGAATTTAAAGAATGGTAC
AAACTGTGGCAATCTCGATTAGAACGACAAGAAGAATCGAAAGAAAATGCCTACGAAATGATGAAAAATAATAACCCATC
CATCATCCCTAGGAACCACCGTGTAGAAGAAGCATTAGAAGCAGCTGTTACAAGTGGAGATTATAGCGTAATGGAGAAGC
TTCTTGAGGCTTTATCAAACCCTTATGCATATTCCGCAGATCAAGAAGATTACTGTGCTCCGCCCGCGCCTACGAATCGT
CCTTATCGTACTTTTTGTGGGACTTGA

Upstream 100 bases:

>100_bases
TAGATTGCAAGGGGAAATATCATATTATACTTTTAGCTAATTTTACAAAGAATACATACGTACAAATACATAATAAAAAA
ATAAACAAGGAGGAGATAAA

Downstream 100 bases:

>100_bases
TTGTTTAATCTGTAAAAAAGTGTGTTCATACAAATTGTGTGAACGCACCCTTTTTTATATTTTCACCTCTCAACTAGAAC
TTTAAAATGCCCCTCCCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFHPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEAL
KIAQDEISKFSVQYENQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWY
KLWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTSGDYSVMEKLLEALSNPYAYSADQEDYCAPPAPTNR
PYRTFCGT

Sequences:

>Translated_488_residues
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFHPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEAL
KIAQDEISKFSVQYENQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWY
KLWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTSGDYSVMEKLLEALSNPYAYSADQEDYCAPPAPTNR
PYRTFCGT
>Mature_487_residues
TKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFHPEELKKEAEIAIFAGNALPEGAHPLAQAYAG
HQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTG
EPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKWQ
LVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEALK
IAQDEISKFSVQYENQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYK
LWQSRLERQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTSGDYSVMEKLLEALSNPYAYSADQEDYCAPPAPTNRP
YRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=442, Percent_Identity=38.9140271493213, Blast_Score=282, Evalue=5e-76,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=39.7489539748954, Blast_Score=357, Evalue=1e-99,
Organism=Saccharomyces cerevisiae, GI6325034, Length=328, Percent_Identity=31.0975609756098, Blast_Score=161, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55007; Mature: 54876

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFHPEELKKEAEI
CCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEALKIAQDEISKFSVQYENQWFLGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCEEEEEHHHHCCCCCCCHHHHHHHH
QLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYKLWQSRLERQEESKENAYEM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTSGDYSVMEKLLEALSNPYAYSADQEDYCAPPAPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
PYRTFCGT
CCCCCCCC
>Mature Secondary Structure 
TKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFHPEELKKEAEI
CCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEALKIAQDEISKFSVQYENQWFLGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEECCEEEEEHHHHCCCCCCCHHHHHHHH
QLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYKLWQSRLERQEESKENAYEM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTSGDYSVMEKLLEALSNPYAYSADQEDYCAPPAPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
PYRTFCGT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA