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The map label for this gene is gerHB [H]

Identifier: 52140769

GI number: 52140769

Start: 4580813

End: 4581913

Strand: Direct

Name: gerHB [H]

Synonym: BCZK4484

Alternate gene names: 52140769

Gene position: 4580813-4581913 (Clockwise)

Preceding gene: 52140770

Following gene: 52140768

Centisome position: 86.42

GC content: 34.24

Gene sequence:

>1101_bases
ATGAGTAAGGTTCAAGAAAAATACCAAATATCTCCTATCTTTGTTTTCTTCTTAATTCACGGTGCACAGTTTGGAGCTGG
CGTTCTTGGCTTCGCTAGAATCACTGCAAAGGCCGCTGGATACGACGGGTGGATAGGCGTTCTAATCACAGGACTCTGTA
TCCATCTCCTTATATGGATGATGTATTTTTTATTAAAAGAAACAAATGGAAATTTAATTGATTTACAAAGGCAAATGTTT
GGAAAATGGATAGGAAATATCTTTAATATCACCTTTGCAGCTTATTTTTTAATCGTCAGTATTTCGGTTATTCGAACGTA
TGTTGAAATTATTCAAGTATGGATGTTTCCTACCGCTTCCACCTTTATGTTAACACTCTTTTTGTGCTTAGTTAGCTATT
ACATTATCTCTTCTGGATTTCGTGTAATTACCGGTATTTGCGTCATCTCTGTGGGTGGTACAATTGGGTATTTATTTCTG
AGCCTATTCGTTTTGAAATACTCGCATTGGGATAATGTACTCCCTATATTCACACATTCTCTTTCAGATATTTTAAAATC
CGCTCAAATGTCAATCTACAGTATGACCGGTTTTGAGGTTTACCTCATGGTTTATCCATTTGTAAAAAAGCCTATGCAGT
CTCATAAATTTGCTCAATACGGAGCACTATTTTCAAATCTACTATATGTATTTAGTACCCTTTTAGCCTTTGCATTTTTT
AGTGAAAAACAATTATTAAAAACGATATGGCCCCAACTTTCTATGACCCAAGTCATTCAATTGCCATTTATAGAAAGACT
CGAATATATTGCAATTTCAGGCTATGCACTCGTTATTATTTCAAGTTTTATCCTCCCTTTGTGGGCGTCAATGAGAGCAA
CGCATGAAATATTTCGTGTCAAACAAAGAGGTGTTTTAATCGCTTTTATCTTTATCACGCTTATTGTTTCACAACTTTTA
ACAAACAGACACGATATTAACACTTTTATTAGTAATGCATCAAAGGTTAGTTTTTGGCTCATTTATGTATACATCCCAAT
CCTATTTATCATTGTGTGGGTGAAAAGAAAATGGAAAAAATCAAAAACACAAGCAAATTAA

Upstream 100 bases:

>100_bases
GTGATGTACAAGCAAGGCCACAACATGTAAAAAAATCAGCAAAAGGAATTTCAACGAAACATAGATCCGACTTTGATGAT
TAAGAAATGAGGTGCATTGG

Downstream 100 bases:

>100_bases
TACTTATTTCTTGTATAACATTCTTCAGTCTAACTGGATGTTTACAAAAAAATATTATCGACGATGTACAGCTGATTCAA
GGAACAGTTTTTGATGCAGC

Product: spore germination protein IB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSKVQEKYQISPIFVFFLIHGAQFGAGVLGFARITAKAAGYDGWIGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQMF
GKWIGNIFNITFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFL
SLFVLKYSHWDNVLPIFTHSLSDILKSAQMSIYSMTGFEVYLMVYPFVKKPMQSHKFAQYGALFSNLLYVFSTLLAFAFF
SEKQLLKTIWPQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGVLIAFIFITLIVSQLL
TNRHDINTFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKTQAN

Sequences:

>Translated_366_residues
MSKVQEKYQISPIFVFFLIHGAQFGAGVLGFARITAKAAGYDGWIGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQMF
GKWIGNIFNITFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFL
SLFVLKYSHWDNVLPIFTHSLSDILKSAQMSIYSMTGFEVYLMVYPFVKKPMQSHKFAQYGALFSNLLYVFSTLLAFAFF
SEKQLLKTIWPQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGVLIAFIFITLIVSQLL
TNRHDINTFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKTQAN
>Mature_365_residues
SKVQEKYQISPIFVFFLIHGAQFGAGVLGFARITAKAAGYDGWIGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQMFG
KWIGNIFNITFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFLS
LFVLKYSHWDNVLPIFTHSLSDILKSAQMSIYSMTGFEVYLMVYPFVKKPMQSHKFAQYGALFSNLLYVFSTLLAFAFFS
EKQLLKTIWPQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGVLIAFIFITLIVSQLLT
NRHDINTFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKTQAN

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42092; Mature: 41961

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCC
>Mature Secondary Structure 
SKVQEKYQISPIFVFFLIHGAQFGAGVLGFARITAKAAGYDGWIGVLITGLCIHLLIWM
CCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH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CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]