Click here to switch to the map view.

The map label for this gene is gerHC

Identifier: 52140768

GI number: 52140768

Start: 4581883

End: 4582968

Strand: Direct

Name: gerHC

Synonym: BCZK4485

Alternate gene names: NA

Gene position: 4581883-4582968 (Clockwise)

Preceding gene: 52140769

Following gene: 52140766

Centisome position: 86.44

GC content: 31.12

Gene sequence:

>1086_bases
ATGGAAAAAATCAAAAACACAAGCAAATTAATACTTATTTCTTGTATAACATTCTTCAGTCTAACTGGATGTTTACAAAA
AAATATTATCGACGATGTACAGCTGATTCAAGGAACAGTTTTTGATGCAGCAAAAGATAATAAAGTAAAAGTAACATTCG
TTTGTCCGATTCAGAAAAAGGGAAATAAAGTTCAAGTTTTTGAAGGAACTGCAAATGCGGTAAAACAAGTAAAAGCAAAT
ACATCTTTAGAGTCTTCTCAACCATTTGCTAGCGGACAAATGCGTGTTGCTCTATATACGATAAAACTTGCGAAGAAAGG
AATGTCTACTTCATTCGATACATTACTTCGAGATGTAAACATAGGAAACGCTTTATATGTTGGCTTATTAGAGGGAAATG
GTACTGAACTTTTAAAAGGCAAATATTCGACTTCATACAACGTTGCAATTTATATAAAAAAATTGCTAGAACATAATATG
GAGACTGGCCCTTTACCAACGGATAATCTGCATGTAGGAGCATTCCGTTATTATCAAGAAGGGAAAGACTACTATATTCC
CATTCTAAAGAAGCATGGTGATAAAATAAAAATTAACGGAATTGGTCTTTTTAAAAAGGATAAATATATCGGTAAAATCG
CGGAAAAAGATATGTTCATCTTTAAAGGTCTATTAGAGAAACATAAATTAGATTCACATGAGTTCAAAACAGATTCTGCA
TACGTAATGATTAATAATATTCGTTCTATTCCAACTTACGATATAAAGATTAAAAATGGAAAACCATCTTTCTTCATTCA
CGTTCATCTTGATGCACGTATTCAAGAACTATCGAAGCAAATTAACTTAGAAAATAACAAGAACACAAAAAACATTGAAA
AAGATATCCAAAAACAATTGAATGTACAAGCTACCAAATTAATTAAGCAGTTTAAATCTTTAAACGTCGATCCTCTTGGG
CTAGGTGCAAAGTATAAACAACATTATCGCGCATTCAAATTAGAAGAATGGAGACAAATGTATAAAGATGTTCCAGTTAC
TATAAAATACACCGTAAACATTACAAATTCTGGTGTAATTGAATGA

Upstream 100 bases:

>100_bases
ACGATATTAACACTTTTATTAGTAATGCATCAAAGGTTAGTTTTTGGCTCATTTATGTATACATCCCAATCCTATTTATC
ATTGTGTGGGTGAAAAGAAA

Downstream 100 bases:

>100_bases
GAAATGATTGAACTCCTCTCTCCAGCATGATACAACGGAAAGAGGAGTTTTTATTTTAGATAGAGAGAGAAGATATTTAT
GGGGGAGCTTATGTCTAAAA

Product: spore germination protein

Products: NA

Alternate protein names: Germination Protein Ger(X)C Family; Spore Germination B3 GerAC Family Protein; Spore Germination Protein KC; Spore Germination Protein GerHC; Spore Germination Protein GerKC; GerC Family Spore Germination Protein; Spore Germination Protein QC; Spore Germination Protein GerA; GerKC1 Protein; Spore Germination Protein GerC Family; Spore Germination Protein GerAC; Spore Germination Protein C

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MEKIKNTSKLILISCITFFSLTGCLQKNIIDDVQLIQGTVFDAAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKAN
TSLESSQPFASGQMRVALYTIKLAKKGMSTSFDTLLRDVNIGNALYVGLLEGNGTELLKGKYSTSYNVAIYIKKLLEHNM
ETGPLPTDNLHVGAFRYYQEGKDYYIPILKKHGDKIKINGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSA
YVMINNIRSIPTYDIKIKNGKPSFFIHVHLDARIQELSKQINLENNKNTKNIEKDIQKQLNVQATKLIKQFKSLNVDPLG
LGAKYKQHYRAFKLEEWRQMYKDVPVTIKYTVNITNSGVIE

Sequences:

>Translated_361_residues
MEKIKNTSKLILISCITFFSLTGCLQKNIIDDVQLIQGTVFDAAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKAN
TSLESSQPFASGQMRVALYTIKLAKKGMSTSFDTLLRDVNIGNALYVGLLEGNGTELLKGKYSTSYNVAIYIKKLLEHNM
ETGPLPTDNLHVGAFRYYQEGKDYYIPILKKHGDKIKINGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSA
YVMINNIRSIPTYDIKIKNGKPSFFIHVHLDARIQELSKQINLENNKNTKNIEKDIQKQLNVQATKLIKQFKSLNVDPLG
LGAKYKQHYRAFKLEEWRQMYKDVPVTIKYTVNITNSGVIE
>Mature_361_residues
MEKIKNTSKLILISCITFFSLTGCLQKNIIDDVQLIQGTVFDAAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKAN
TSLESSQPFASGQMRVALYTIKLAKKGMSTSFDTLLRDVNIGNALYVGLLEGNGTELLKGKYSTSYNVAIYIKKLLEHNM
ETGPLPTDNLHVGAFRYYQEGKDYYIPILKKHGDKIKINGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSA
YVMINNIRSIPTYDIKIKNGKPSFFIHVHLDARIQELSKQINLENNKNTKNIEKDIQKQLNVQATKLIKQFKSLNVDPLG
LGAKYKQHYRAFKLEEWRQMYKDVPVTIKYTVNITNSGVIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41014; Mature: 41014

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKNTSKLILISCITFFSLTGCLQKNIIDDVQLIQGTVFDAAKDNKVKVTFVCPIQKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
GNKVQVFEGTANAVKQVKANTSLESSQPFASGQMRVALYTIKLAKKGMSTSFDTLLRDVN
CCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHCCCCCCHHHHHHHCC
IGNALYVGLLEGNGTELLKGKYSTSYNVAIYIKKLLEHNMETGPLPTDNLHVGAFRYYQE
CCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECC
GKDYYIPILKKHGDKIKINGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSA
CCCEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
YVMINNIRSIPTYDIKIKNGKPSFFIHVHLDARIQELSKQINLENNKNTKNIEKDIQKQL
EEEEECCCCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
NVQATKLIKQFKSLNVDPLGLGAKYKQHYRAFKLEEWRQMYKDVPVTIKYTVNITNSGVI
CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEECCCCCC
E
C
>Mature Secondary Structure
MEKIKNTSKLILISCITFFSLTGCLQKNIIDDVQLIQGTVFDAAKDNKVKVTFVCPIQKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
GNKVQVFEGTANAVKQVKANTSLESSQPFASGQMRVALYTIKLAKKGMSTSFDTLLRDVN
CCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHCCCCCCHHHHHHHCC
IGNALYVGLLEGNGTELLKGKYSTSYNVAIYIKKLLEHNMETGPLPTDNLHVGAFRYYQE
CCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECC
GKDYYIPILKKHGDKIKINGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSA
CCCEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
YVMINNIRSIPTYDIKIKNGKPSFFIHVHLDARIQELSKQINLENNKNTKNIEKDIQKQL
EEEEECCCCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
NVQATKLIKQFKSLNVDPLGLGAKYKQHYRAFKLEEWRQMYKDVPVTIKYTVNITNSGVI
CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEECCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA