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The map label for this gene is sdhC [H]

Identifier: 51894311

GI number: 51894311

Start: 3383509

End: 3384144

Strand: Reverse

Name: sdhC [H]

Synonym: STH3176

Alternate gene names: 51894311

Gene position: 3384144-3383509 (Counterclockwise)

Preceding gene: 51894313

Following gene: 51894310

Centisome position: 94.9

GC content: 61.32

Gene sequence:

>636_bases
GTGAGACGCAATCATTTCCTGCTTCGGCGGCTTCACTCGCTTGCCGGTGTTGTTCCCGTGGGCCTCTTCCTGGTGTTCCA
CCTGTTCGAGAACTCGAAGGCCATGTACGGGCCCGAGGCGTACAACGAAGTCGTGCTGTCCATCAACTCGCTGCCGTTTA
TCCTGTTCATCGAGATCTTTGGCATTTTCCTGCCGCTTTACTTCCATGCGATCTACGGCATCTACATCGCGGCCGACGCC
CGGCACAACGTCTCCCAGTACAGCTACGGCCGGAACTGGGCCTTCCTGCTGCAGCGCATCACCGGTCTGGTGACGCTGGT
CTTCGTGACGTACCACATCTGGCACTTCCGAGTCCAGAAAGCCCTGGGCGTCTATGACGGGAACCTGGAACTGCCGGGCC
TGCCCAGTTACACCATCGTCGCGGAGGCCTTCGCCAGCCCGCTGGCCAAGGTACTCTACGGGATCGGCATCGTGGCCGCG
GCGTACCACTTCGCCAACGGCCTGTACACCTTCCTCATCACCTGGGGGATCACCATCGGCCCGCGCAGCCAGCGGGTCTC
GAGCCTGGTCACGAACCTGCTGTTCGTGCTCGTCTCGGCAATGGGCCTCACCGCCCTGTTCGCATTCCAGATGTAG

Upstream 100 bases:

>100_bases
GCACGTGTCCTGCGAAGGGGCAAGGTCCAGTATGGATTGGACGGAGGCTTCCTGACAAGAGCAAGTGGGGAAGGAGCGTA
CCGGGAGTATGCGAGAGTTT

Downstream 100 bases:

>100_bases
GAGGGAACGGTCGTGCGACGCAATCTCATTGTCGTTGGCGGCGGTCTGGCCGGGCTGATGGCCGTCATCAAGGCTGCCGA
GGCCGGGTTCCACGTCGACC

Product: succinate dehydrogenase cytochrome b558 subunit

Products: NA

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MRRNHFLLRRLHSLAGVVPVGLFLVFHLFENSKAMYGPEAYNEVVLSINSLPFILFIEIFGIFLPLYFHAIYGIYIAADA
RHNVSQYSYGRNWAFLLQRITGLVTLVFVTYHIWHFRVQKALGVYDGNLELPGLPSYTIVAEAFASPLAKVLYGIGIVAA
AYHFANGLYTFLITWGITIGPRSQRVSSLVTNLLFVLVSAMGLTALFAFQM

Sequences:

>Translated_211_residues
MRRNHFLLRRLHSLAGVVPVGLFLVFHLFENSKAMYGPEAYNEVVLSINSLPFILFIEIFGIFLPLYFHAIYGIYIAADA
RHNVSQYSYGRNWAFLLQRITGLVTLVFVTYHIWHFRVQKALGVYDGNLELPGLPSYTIVAEAFASPLAKVLYGIGIVAA
AYHFANGLYTFLITWGITIGPRSQRVSSLVTNLLFVLVSAMGLTALFAFQM
>Mature_211_residues
MRRNHFLLRRLHSLAGVVPVGLFLVFHLFENSKAMYGPEAYNEVVLSINSLPFILFIEIFGIFLPLYFHAIYGIYIAADA
RHNVSQYSYGRNWAFLLQRITGLVTLVFVTYHIWHFRVQKALGVYDGNLELPGLPSYTIVAEAFASPLAKVLYGIGIVAA
AYHFANGLYTFLITWGITIGPRSQRVSSLVTNLLFVLVSAMGLTALFAFQM

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: NA

Molecular weight: Translated: 23743; Mature: 23743

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNHFLLRRLHSLAGVVPVGLFLVFHLFENSKAMYGPEAYNEVVLSINSLPFILFIEIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
GIFLPLYFHAIYGIYIAADARHNVSQYSYGRNWAFLLQRITGLVTLVFVTYHIWHFRVQK
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGVYDGNLELPGLPSYTIVAEAFASPLAKVLYGIGIVAAAYHFANGLYTFLITWGITIG
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PRSQRVSSLVTNLLFVLVSAMGLTALFAFQM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRNHFLLRRLHSLAGVVPVGLFLVFHLFENSKAMYGPEAYNEVVLSINSLPFILFIEIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
GIFLPLYFHAIYGIYIAADARHNVSQYSYGRNWAFLLQRITGLVTLVFVTYHIWHFRVQK
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGVYDGNLELPGLPSYTIVAEAFASPLAKVLYGIGIVAAAYHFANGLYTFLITWGITIG
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PRSQRVSSLVTNLLFVLVSAMGLTALFAFQM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]