Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is grdC [H]

Identifier: 51894003

GI number: 51894003

Start: 3088395

End: 3091067

Strand: Reverse

Name: grdC [H]

Synonym: STH2865

Alternate gene names: 51894003

Gene position: 3091067-3088395 (Counterclockwise)

Preceding gene: 51894004

Following gene: 51894002

Centisome position: 86.68

GC content: 73.77

Gene sequence:

>2673_bases
ATGACCGAGCCTGTCATCCGCGGGGCGGCCTACTGCCTGATCCACGCCCCGAACCTGCTGGTACACTACGGCACCACGCC
GGCGATGGAGCGTCGGCTGAACCCGGAAAGCCCGTACCTGGCCAGGCTGCCCCGGCACCTGCGCAGCTTCGAGGAGGCCC
TGGCCTACCCGCCCAACCAGACCTACCTGGGCCGTCTCCGGCCCGACGAGCTGGCCCGGATCCCCCGCCCCTGGTACGAG
CACCCGGTGGAGGGGGCGGAGCGGGAAGCCCGGTACGGCGAGATGATGCCGGAGGATGAGTTCCTGGCCCTCCTGAAACT
GGTCGACGCGTTCGATCTGGTCCGGCTGGAGGCCGGTTTCGCCGCAGAGATGGCCGAGCGGCTGGCCGCGCACCCGCTCT
GGGCGGCGGACGCCGCCCGGCTGGGGACGGGCGTCGAGCAGGCCGAACTGCAGCGGCTGCTGGAGGAGAAGGCGGCTCCC
CTGTACCTGGGCGACCGGCTGGTGGGGGTCGTCCGCCGGGCCCACGAGCACGACGAGACGCTCTCCAGCCACGTGATGCT
GGAGAACCTGGTGACCAAAGCCTCCGCGGTGCTGGGGCTCCGGCACCTCTTTGCCAGGACCGGCGTAAAGCCGGAGGAGG
TCGAGTACATTATTGAGTGCTCGGAAGAGGCGTGCGGCGACATGAACCAGCGGGGCGGTGGCAACTTCGCCAAGGCCATC
GGCGAGATGGCCGGCTGTGTGAACGCCACCGGCTCCGACACCCGCTCCTTCTGCGCAGGTCCCACCCACGCCCTCATCGA
GGCGGCCGCCCTGATCAGGGCCGGCGTGTTCCGGCACGTGGTGGTGCTGGCGGGCGGCACCCCGGCCAAGCTCGGGCTGA
ACTCCCGCGACCACGTGGCCAAGGGGCTGCCGGTGCTGGAGGACGTCATCGGCGCCTTCGCGGTCCACCTCTCGGCCGAC
GACCACACGAGCCCCCGGGTGCGGCTCGACGTGGTGGGCCGGCACAAGATCGGCTCGGGCTCCTCGCCCCAGGCGGTGAT
GGAGGCCCTGGTGACCGAGCCGCTGGAGCGCGCGGGGCTGAAGCTCTCCGACGTGGATCGGTACGGCGTCGAGATGCAGA
ACCCTGAGCTCACCGAGCCCGCGGGGGCCGGCGACGTGCCCCAGGCCAACTACAAGATGATCGCCGCGCTGGCGGTGAAG
CGGGGCGAGATCGGCCGGGCGGAGCTGCCTGCCTTCGTCGCCGCCCACGGCATGCCCGGCTTCGCGCCGACCCAGGGGCA
CATCCCCTCCGGCGTGCCGGTGATCGGCCACGTGCGGGACGCGATCATGGCCGGTGAGATCCGGCGGGCGATGGTCATCG
GCAAGGGGTCGCTCTTCCTGGGCCGCATGACCAACCTGTTCGACGGCGTGTCGGTGCTGCTGGAGCGGAACCCGGGCCCC
CAGCCCGGGGAAGCGGCTGACGCACCCGGCGGCGCGCCCGCAGAGGCCGGCGCGCCTGCCCCGAAGCCGGTCCGCCCGGC
GGTGGGCATCACGCTGCACGGCAGCGAGCTGGGCGAGGAGGAGGTCCTGCGGGCGGCTGAGCAGGCCCGGCGGCAGTGGC
CGGACATCGAGGTGGTGCTCATCGGCAGGCCGCCCCGGGAGACGCCGGTTCGCTGGGTGGAGGCCGGCGACGGGTGCCTC
GCCGACGAGCACCGGACCATGGAGCGGATGCTGGCCGCGGGCGAGCTGGCGGCAGCGGTGACGCTGCACTACGCGTTCCC
GATCGGCGTGGCCACGGTGGGCCGGGTCATCACCCCCGCCCGCGGCCGCGAGATGCTGATCGCGACCACCACCGGCACGG
CCGCGGCTGACCGGGTCGAGGCGATGGTGCGCGCCGCGATCGGCGGCATCGCCGTCGCCCGGGCGCTGGGACTGACCGAC
CCGACGGTGGGCATCCTGAACGTGGACGGCGCCCGCCAGGCCGAGCGGGTCCTGGAGGCGCTGCGCACGGGCGGCTATCC
CTTCCGGTGGGCGGCGTCCGGCCGGGCCGACGGCGGCGCCCTGATGCGGGGCAACGACGTGCTGACCGGCGAGCCCGACG
TGCTGGTGACCGACAGCCTGACGGGCAACCTGCTGATGAAGCTGATCTCGGCCCAGTCCACCGGCGGCAGCTACGAGGCG
ACCGGCTACGGCTACGGCCCCGGGGTCGGCCCCGAGCAGCGGCAGATCGTCCACATCATCAGCCGGGCGTCCGGCGCGCC
GGTCATCGCCGGGGCGATCCGGTACGCCGCGGACATGGCCCGGGGCAACCTGCCGCAGGTGGTGGCGCAGGAATACGCCC
GTGCCCGGGAGGCCGGGCTGGACCGGCTGCTGGCGGAGCGGCGCGGGGCCGGCGGAGGCCAGATCCGTCCGCAGGCAGGC
CCGGATGCCGTGGCGGGGCCGCAGGCCGGCGCAGAGGCTGGCGGCACGGTCGCCGCCCCGGACGGCCCGGCAGCGGCGCC
GCCCGAGAAGGTGGCGACGGCGGAGATCCCCGGCGTTGACATCCTCGACCTGGAGGAGGCGGTGGCCTGCCTGTGGCGGC
GGGGCATCTACGCCAAGTCCGGCATGGGCTGCACCGGCCCGGTGGTCCTGGTGGCCGATGAGGACCTGGAAGCCGCCCGG
ACCGCGCTGAAGGAGGCCGGCTTCCTCGGGTAA

Upstream 100 bases:

>100_bases
GCCCGGTTCGTAGCGGCGTGCGCGGCGATGGACCGGTCCACCGGCGGGGTACCCTGCACCCGGCGACTGCCCCGGCGCGC
GACGAAGGAGAGTGATGCCC

Downstream 100 bases:

>100_bases
AGTCGCGACGGAGGAGTTTTCCCGCCGCCGCCGAACAGATGAAGGGTTGTGCGGGTTCGCGGGACCCGAAATGTGAAGGA
GGCGGCGGGATGGCATCCTG

Product: glycine reductase complex C

Products: NA

Alternate protein names: Protein PC beta [H]

Number of amino acids: Translated: 890; Mature: 889

Protein sequence:

>890_residues
MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYE
HPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAP
LYLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI
GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSAD
DHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVK
RGEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP
QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCL
ADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTD
PTVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA
TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAG
PDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAAR
TALKEAGFLG

Sequences:

>Translated_890_residues
MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYE
HPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAP
LYLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI
GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSAD
DHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVK
RGEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP
QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCL
ADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTD
PTVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA
TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAG
PDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAAR
TALKEAGFLG
>Mature_889_residues
TEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQTYLGRLRPDELARIPRPWYEH
PVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGFAAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPL
YLGDRLVGVVRRAHEHDETLSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAIG
EMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVAKGLPVLEDVIGAFAVHLSADD
HTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGLKLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKR
GEIGRAELPAFVAAHGMPGFAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGPQ
PGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVLIGRPPRETPVRWVEAGDGCLA
DEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPARGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDP
TVGILNVDGARQAERVLEALRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEAT
GYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGLDRLLAERRGAGGGQIRPQAGP
DAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVDILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAART
ALKEAGFLG

Specific function: In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013751
- InterPro:   IPR017236
- InterPro:   IPR016039
- InterPro:   IPR016038 [H]

Pfam domain/function: PF08545 ACP_syn_III [H]

EC number: =1.21.4.2; =1.21.4.3; =1.21.4.4 [H]

Molecular weight: Translated: 93739; Mature: 93608

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQ
CCCCHHCCCEEEEEECCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
TYLGRLRPDELARIPRPWYEHPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGF
CEECCCCHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPLYLGDRLVGVVRRAHEHDET
HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
LSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHH
GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVA
HHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHH
KGLPVLEDVIGAFAVHLSADDHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGL
HCCHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
KLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKRGEIGRAELPAFVAAHGMPG
EEECHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHCCHHHHHCCCCC
FAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
IGRPPRETPVRWVEAGDGCLADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPA
ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDPTVGILNVDGARQAERVLEA
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
LRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA
HHCCCCCEEEECCCCCCCCEEEECCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCCC
TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DRLLAERRGAGGGQIRPQAGPDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCC
ILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAARTALKEAGFLG
EECHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEPVIRGAAYCLIHAPNLLVHYGTTPAMERRLNPESPYLARLPRHLRSFEEALAYPPNQ
CCCHHCCCEEEEEECCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
TYLGRLRPDELARIPRPWYEHPVEGAEREARYGEMMPEDEFLALLKLVDAFDLVRLEAGF
CEECCCCHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AAEMAERLAAHPLWAADAARLGTGVEQAELQRLLEEKAAPLYLGDRLVGVVRRAHEHDET
HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
LSSHVMLENLVTKASAVLGLRHLFARTGVKPEEVEYIIECSEEACGDMNQRGGGNFAKAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCCCCHHHHHH
GEMAGCVNATGSDTRSFCAGPTHALIEAAALIRAGVFRHVVVLAGGTPAKLGLNSRDHVA
HHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHH
KGLPVLEDVIGAFAVHLSADDHTSPRVRLDVVGRHKIGSGSSPQAVMEALVTEPLERAGL
HCCHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
KLSDVDRYGVEMQNPELTEPAGAGDVPQANYKMIAALAVKRGEIGRAELPAFVAAHGMPG
EEECHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHCCHHHHHCCCCC
FAPTQGHIPSGVPVIGHVRDAIMAGEIRRAMVIGKGSLFLGRMTNLFDGVSVLLERNPGP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
QPGEAADAPGGAPAEAGAPAPKPVRPAVGITLHGSELGEEEVLRAAEQARRQWPDIEVVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
IGRPPRETPVRWVEAGDGCLADEHRTMERMLAAGELAAAVTLHYAFPIGVATVGRVITPA
ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGREMLIATTTGTAAADRVEAMVRAAIGGIAVARALGLTDPTVGILNVDGARQAERVLEA
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
LRTGGYPFRWAASGRADGGALMRGNDVLTGEPDVLVTDSLTGNLLMKLISAQSTGGSYEA
HHCCCCCEEEECCCCCCCCEEEECCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCCC
TGYGYGPGVGPEQRQIVHIISRASGAPVIAGAIRYAADMARGNLPQVVAQEYARAREAGL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DRLLAERRGAGGGQIRPQAGPDAVAGPQAGAEAGGTVAAPDGPAAAPPEKVATAEIPGVD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCC
ILDLEEAVACLWRRGIYAKSGMGCTGPVVLVADEDLEAARTALKEAGFLG
EECHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8223622; 1587286 [H]