| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893390
Identifier: 51893390
GI number: 51893390
Start: 2417538
End: 2420060
Strand: Reverse
Name: 51893390
Synonym: STH2252
Alternate gene names: NA
Gene position: 2420060-2417538 (Counterclockwise)
Preceding gene: 51893391
Following gene: 51893389
Centisome position: 67.86
GC content: 69.08
Gene sequence:
>2523_bases ATGAACTGGCGACGCTGGTTTGCGGGGGTCCTGGCCTGCTTGCTTGCCATGGTACCCAGTCCCGTCGTTGTCGCGGGGGA CTGGATCACGAAGGGTGGTTCTCCGCAGCGCACGTCGACAGTCCTCGACCCTCACGGCCTGATTGAGTTGAGTCCGTACT GGGAAACGGAGGCGTTGGGGGAGAGTGCGGCCCAACCGGCGGTCGTCGATGGAGTCATCTACCATCTGGCAGGGCCCTAC CTCTGGAGGCTGGAGTTGGACGACCTTCAACGACCGGTTGGCGAAGCCGTCGCGGTCAGTGATCCGGTGAAGCGAAAGGG AGTCGAGTTCAACGTGGCGCCTGGAGGCGCGTTCATCGCCCCGCAGTCCAGCCCTAGCTACAGTCCGGAGACCGGTATCC TCTATTTTGGCACGGGCTATGGTTGGCTCTGGGCGTACCACACGAGAGAAGGTTGGTTTCGGCCTGCTGAACTGGACTTA GGCTGTCCTGTTGTGGGCTCGCCGGTCGTCATTCACGACCAGGGACGGGACATCGTCGTGGTCGCTGACCGACCCAACTA CCCCGGCGAGGAAAACCGGCCAGAAGGACGACCGCTGTGTCCCAGGGGGCATGGGAAGGTCTGGGTAATCCGAGCGTTGG ATGACCTGGACCGCGTTCCAGAGGTGCACCACTACGAAGCGGCTACGACGAAACAAGATGAAAGCGGCTTCGGCGGCTTC ATCACGCCCTCCGCCGTCATGGCTCCGCCCCACGGGAGCAACCCCAGCTTTGTCATCGGCACCGATGGCTTTGAGGGAGG GCGCGCGCTGCGGCTGGCCCTGGACCGCGACAACGACTATCGCCCTTACCGGGTCTGGACAGTCGACAGTACCGCCGGCT TCGCCGGCAACTTCACCTCAGACGGCACCCACGCGTACTGGTTGGACACCCGGGGGCGCCTCTGGGGCGCCAATCTGCAT GACGGGCTGGAGCCCGCCGGCTGGAAAGGGCACATGGTCGACGTCCCCGCCCTCATCGGCGCCAGGAACGCCTTCACCAA CACCGAACCCGCGGTCGAGGTCCGCCAGACCCCCGACGGCCCCGAAACCCACCTCTACGTCACCCTCCGCAACTACACCG ACACCGGCGCGGGCCTCCGGGACGGCCCGACCGGCAGCGACGGCGCCGTCGTGGCGCTCGGCCCCGGCGGCGAACTGAAG TGGTACCGCAAGTTCGGCCCGGCGGACCGGCTGGGCGAGCGGATGGCCTCCCTCAACACCGCACCGCTGGCCCTGATCAG CCGGGGCGCACTCATCTTCGGCGACGTCAACGGCCACATCTACAGCTACGCCCTGGACACCGGCCAGCCGATGGGCGGCG ACGGGCGGCCCGCGCTCATCCAGCCGGAAGGGCGGGCGCCCACGGACCGGCTGTTCCTGCTGAAGGACGACGAGCAGCCG AACACCGGCCCCTACAACTTCTCCCAGGTCTCAGGCGTCGGCGTCGATCCCGCCTTCGCCTACGGCCTGCTGCTCGTCGG CGTCAACTACACCGACGCTTCCGGGACCTCCGGCCGGCTGGTGGCCTACCGGGCCGGCGAGGCCTACGACCTGCGGTGGC TGGATGAACCGGGGCCCCTGGAGCTGGAGCCGGGCAAGACAGTCGCCCTGCAGCCCCGGCTCCAGCTGGAGCTGACGGCC CGGACCCTGGCCGCGCTCTGCCCGGGCCCGCTGTCCGTCGAGTGGTTCCTCACCGACGAGAACGGCAAGCTGGTGCGGTC CCTGGGGACGGCGCCGCTGCCCGGCGATCTGGCGCCGCAGCAGCCCCACCCGGTGCCGCTGACCGTCGCCCTGACAGAGA CCGACCCGGCGGAGGGGCAGATCGTGGGCATCATCGACTTGCCCTCCGTGTACGCCCTCAGCGCGCCGCACACGGCCAAC CCGAAGGTGGCGGCGGCCCGGGGCCTCGCGGCGGCGCTGGGGCTTCCGGCCGAGAAGAGCTGCCTCGGTGCGGTGGCCGA GGTGGTGGAGCGGGAGGGGGAGCCGGGGCCGGAGGGCGGCCTGGCCAACAACGTGCTGATCGTGCCGTACCGCAACCCGC AGCCGCCCGATGAGCCTGAGCGTCCGGGCGAGGAGGGCGGAGGCGGGAAAGCGATCATCGACGACCCGTGGGTGGTGGAG CTGGCGGTGCCGGAGGTGGCCGAGGCAGGCCGGCCGTTTGAGGTCGGGATCTACCTGGGTTACCAGAACAACCTGGGTCA GGGCGAAATCCGGGTGCCGCTCCGGCTGTGGGCGCGGCCTGCGAGGGGCGCATCACCGCCCCCGGACGTGTGGCAGATGG TGACGATCGACAAGGTGCCCTGCTTCAGCCTGAAGCCGGGGACGATCCCGGGGCTGAGCGTAGGCATGTGGGAGATCATC GCCGAGATCGACTACCCGGCTGACACCCGGCCGGAGAACAACCGGGTCATCCGGAGGGTGGAGGTGCTGCACCTGAAGCC GGGCGAGAGCGGCGGCGCGGAGGGCGGGGCCATCACGGACTGA
Upstream 100 bases:
>100_bases GTACCAGGTTCACATCTTCACGCCGTTCTTCCCCCTGTACGAGTACCCCAGCTGGTACCTGGAGAATCGCGCGGTGAGGT ACTAAGGGGGAGCTGGAATT
Downstream 100 bases:
>100_bases CGGCCGTGCCATCGGCGACGGAGGCGATGCCACCACTGAGTGCGGTGCTGTCGGCGACCGTGGGCGATGCCACCACTGAG TGCGGTGCTGCCGGCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MNWRRWFAGVLACLLAMVPSPVVVAGDWITKGGSPQRTSTVLDPHGLIELSPYWETEALGESAAQPAVVDGVIYHLAGPY LWRLELDDLQRPVGEAVAVSDPVKRKGVEFNVAPGGAFIAPQSSPSYSPETGILYFGTGYGWLWAYHTREGWFRPAELDL GCPVVGSPVVIHDQGRDIVVVADRPNYPGEENRPEGRPLCPRGHGKVWVIRALDDLDRVPEVHHYEAATTKQDESGFGGF ITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLH DGLEPAGWKGHMVDVPALIGARNAFTNTEPAVEVRQTPDGPETHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELK WYRKFGPADRLGERMASLNTAPLALISRGALIFGDVNGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQP NTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGTSGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTA RTLAALCPGPLSVEWFLTDENGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIVGIIDLPSVYALSAPHTAN PKVAAARGLAAALGLPAEKSCLGAVAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKAIIDDPWVVE LAVPEVAEAGRPFEVGIYLGYQNNLGQGEIRVPLRLWARPARGASPPPDVWQMVTIDKVPCFSLKPGTIPGLSVGMWEII AEIDYPADTRPENNRVIRRVEVLHLKPGESGGAEGGAITD
Sequences:
>Translated_840_residues MNWRRWFAGVLACLLAMVPSPVVVAGDWITKGGSPQRTSTVLDPHGLIELSPYWETEALGESAAQPAVVDGVIYHLAGPY LWRLELDDLQRPVGEAVAVSDPVKRKGVEFNVAPGGAFIAPQSSPSYSPETGILYFGTGYGWLWAYHTREGWFRPAELDL GCPVVGSPVVIHDQGRDIVVVADRPNYPGEENRPEGRPLCPRGHGKVWVIRALDDLDRVPEVHHYEAATTKQDESGFGGF ITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLH DGLEPAGWKGHMVDVPALIGARNAFTNTEPAVEVRQTPDGPETHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELK WYRKFGPADRLGERMASLNTAPLALISRGALIFGDVNGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQP NTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGTSGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTA RTLAALCPGPLSVEWFLTDENGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIVGIIDLPSVYALSAPHTAN PKVAAARGLAAALGLPAEKSCLGAVAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKAIIDDPWVVE LAVPEVAEAGRPFEVGIYLGYQNNLGQGEIRVPLRLWARPARGASPPPDVWQMVTIDKVPCFSLKPGTIPGLSVGMWEII AEIDYPADTRPENNRVIRRVEVLHLKPGESGGAEGGAITD >Mature_840_residues MNWRRWFAGVLACLLAMVPSPVVVAGDWITKGGSPQRTSTVLDPHGLIELSPYWETEALGESAAQPAVVDGVIYHLAGPY LWRLELDDLQRPVGEAVAVSDPVKRKGVEFNVAPGGAFIAPQSSPSYSPETGILYFGTGYGWLWAYHTREGWFRPAELDL GCPVVGSPVVIHDQGRDIVVVADRPNYPGEENRPEGRPLCPRGHGKVWVIRALDDLDRVPEVHHYEAATTKQDESGFGGF ITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTSDGTHAYWLDTRGRLWGANLH DGLEPAGWKGHMVDVPALIGARNAFTNTEPAVEVRQTPDGPETHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELK WYRKFGPADRLGERMASLNTAPLALISRGALIFGDVNGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQP NTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGTSGRLVAYRAGEAYDLRWLDEPGPLELEPGKTVALQPRLQLELTA RTLAALCPGPLSVEWFLTDENGKLVRSLGTAPLPGDLAPQQPHPVPLTVALTETDPAEGQIVGIIDLPSVYALSAPHTAN PKVAAARGLAAALGLPAEKSCLGAVAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKAIIDDPWVVE LAVPEVAEAGRPFEVGIYLGYQNNLGQGEIRVPLRLWARPARGASPPPDVWQMVTIDKVPCFSLKPGTIPGLSVGMWEII AEIDYPADTRPENNRVIRRVEVLHLKPGESGGAEGGAITD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89946; Mature: 89946
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWRRWFAGVLACLLAMVPSPVVVAGDWITKGGSPQRTSTVLDPHGLIELSPYWETEALG CCHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCEEECCCCEEEECCCCCHHHHC ESAAQPAVVDGVIYHLAGPYLWRLELDDLQRPVGEAVAVSDPVKRKGVEFNVAPGGAFIA HHCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCCCEEECCCCHHHCCCEEEECCCCEEEC PQSSPSYSPETGILYFGTGYGWLWAYHTREGWFRPAELDLGCPVVGSPVVIHDQGRDIVV CCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEE VADRPNYPGEENRPEGRPLCPRGHGKVWVIRALDDLDRVPEVHHYEAATTKQDESGFGGF EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCCE ITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTS ECCCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC DGTHAYWLDTRGRLWGANLHDGLEPAGWKGHMVDVPALIGARNAFTNTEPAVEVRQTPDG CCCEEEEEECCCCEECCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCEEEEECCCC PETHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPADRLGERMASLNT CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCC APLALISRGALIFGDVNGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQP CCCHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCC NTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGTSGRLVAYRAGEAYDLRWLDEPGPL CCCCCCHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCE ELEPGKTVALQPRLQLELTARTLAALCPGPLSVEWFLTDENGKLVRSLGTAPLPGDLAPQ EECCCCEEEECCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCCEEHHCCCCCCCCCCCCC QPHPVPLTVALTETDPAEGQIVGIIDLPSVYALSAPHTANPKVAAARGLAAALGLPAEKS CCCCEEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHH CLGAVAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKAIIDDPWVVE HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEE LAVPEVAEAGRPFEVGIYLGYQNNLGQGEIRVPLRLWARPARGASPPPDVWQMVTIDKVP EECCHHHHCCCCEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCCCCCEEEEEECCCC CFSLKPGTIPGLSVGMWEIIAEIDYPADTRPENNRVIRRVEVLHLKPGESGGAEGGAITD CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MNWRRWFAGVLACLLAMVPSPVVVAGDWITKGGSPQRTSTVLDPHGLIELSPYWETEALG CCHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCEEECCCCEEEECCCCCHHHHC ESAAQPAVVDGVIYHLAGPYLWRLELDDLQRPVGEAVAVSDPVKRKGVEFNVAPGGAFIA HHCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCCCEEECCCCHHHCCCEEEECCCCEEEC PQSSPSYSPETGILYFGTGYGWLWAYHTREGWFRPAELDLGCPVVGSPVVIHDQGRDIVV CCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEE VADRPNYPGEENRPEGRPLCPRGHGKVWVIRALDDLDRVPEVHHYEAATTKQDESGFGGF EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCCE ITPSAVMAPPHGSNPSFVIGTDGFEGGRALRLALDRDNDYRPYRVWTVDSTAGFAGNFTS ECCCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC DGTHAYWLDTRGRLWGANLHDGLEPAGWKGHMVDVPALIGARNAFTNTEPAVEVRQTPDG CCCEEEEEECCCCEECCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCEEEEECCCC PETHLYVTLRNYTDTGAGLRDGPTGSDGAVVALGPGGELKWYRKFGPADRLGERMASLNT CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCC APLALISRGALIFGDVNGHIYSYALDTGQPMGGDGRPALIQPEGRAPTDRLFLLKDDEQP CCCHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCC NTGPYNFSQVSGVGVDPAFAYGLLLVGVNYTDASGTSGRLVAYRAGEAYDLRWLDEPGPL CCCCCCHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCE ELEPGKTVALQPRLQLELTARTLAALCPGPLSVEWFLTDENGKLVRSLGTAPLPGDLAPQ EECCCCEEEECCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCCEEHHCCCCCCCCCCCCC QPHPVPLTVALTETDPAEGQIVGIIDLPSVYALSAPHTANPKVAAARGLAAALGLPAEKS CCCCEEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHH CLGAVAEVVEREGEPGPEGGLANNVLIVPYRNPQPPDEPERPGEEGGGGKAIIDDPWVVE HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEE LAVPEVAEAGRPFEVGIYLGYQNNLGQGEIRVPLRLWARPARGASPPPDVWQMVTIDKVP EECCHHHHCCCCEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCCCCCEEEEEECCCC CFSLKPGTIPGLSVGMWEIIAEIDYPADTRPENNRVIRRVEVLHLKPGESGGAEGGAITD CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA