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The map label for this gene is ykfC [H]

Identifier: 51893118

GI number: 51893118

Start: 2117007

End: 2117993

Strand: Reverse

Name: ykfC [H]

Synonym: STH1980

Alternate gene names: 51893118

Gene position: 2117993-2117007 (Counterclockwise)

Preceding gene: 51893119

Following gene: 51893115

Centisome position: 59.39

GC content: 64.74

Gene sequence:

>987_bases
ATGGAGCAGGTGGTGGCCAGGGAGAACATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCCCCCGGCGTGGA
CGGTGTCCCCACCGAACGGCTGCGGGACCAGATTCGCGTGGAGTGGAGCCGCATCCGTGAGGAACTGCTCCAGGGGACCT
ACAGACCGCAGCCAGTCCGCCGGGTCGAAATCCCGAAACCGGGCGGCGGCAAGCGGATGCTGGGGATTCCCACCGTGATG
GACCGCCTGATCCAGCAGGCACTCCTGCAAGTACTGACGCCGATCTTTGACCCGACATTCTCCGAATCCAGCTACGGCTT
TCGGCCGGGGCGGCGGGGTCATGATGCGGTCAGGAAGGCACGTCAGTACGTGGAGGAAGGGTACGACTGGGTCGTGGACA
TGGACCTGGAGAAGTTCTTCGACCGGGTCAACCACGACGTGCTGATGGCCCGCGTGGCGCGGCGGGTAACGGATAAGCGT
GTGCTGCGGCTGATCCGGCGGTACTTACAGGCCGGGGTCATGCTGAACGGGGTAGTCGTGGCGACGGAGGAAGGGACGCC
GCAGGGCGGTCCGCTGAGTCCGCTGCTGGCGAACATCCTGCTGGATGACCTCGACAAGGAGCTGGAGCGCCGTGGCCACC
ACTTTGTCCGGTACGCCGATGACTGCAACATCTACGTCCGCAGCAAGCGGGCGGGAGAACGGGTCTACAGGAGCGTGCGC
CACTTCCTGCAGGAGCGGTTACGGCTGAAGGTCAACGAGGAGAAGAGCGCAGTAGACCGGCCGTGGAAGCGGCAGTTCCT
CGGGTTTAGCTTCTACAAGCACCGGGGAGTGCGCATCCGGCTGGCCCCGAAGAGCCTGAAACGCGTGAAGGACAAGCTCC
GCACGCTGACGGACCGCAACCGCAGCCAACCGAATCCGGTGCCTGAATGCCTACTTGCGGGGCTGGGTTGGGTACTATGC
GCTCTCCGATGCCAGGTCAGCCTTTGA

Upstream 100 bases:

>100_bases
CTCGCCGGAGGTAGCGGTGAAGCCGCAAGGGACGGCGAGAGGGTGGAGTGGGCAGCCGGCACAAGACGGAACGTCACCCC
GCGGGGAGCACAGCAACCTG

Downstream 100 bases:

>100_bases
AAGACTCGAAGGATGGCTGAAGCGTCGGCTGCGAGCATGCGTATGGAGGCAGTGGAAGCGTGTACGCACGCGCTTTCGGG
AGTTACGCGCCCTCGGTTTG

Product: group II intron-encoding maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQPNPVPECLLAGLGWVLC
ALRCQVSL

Sequences:

>Translated_328_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQPNPVPECLLAGLGWVLC
ALRCQVSL
>Mature_328_residues
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVRRVEIPKPGGGKRMLGIPTVM
DRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKR
VLRLIRRYLQAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQPNPVPECLLAGLGWVLC
ALRCQVSL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=244, Percent_Identity=29.9180327868852, Blast_Score=120, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=358, Percent_Identity=26.8156424581006, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 37954; Mature: 37954

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRN
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCC
RSQPNPVPECLLAGLGWVLCALRCQVSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQVVARENMLAALKRVERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPVR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKA
EEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
RQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVV
HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEE
ATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVR
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
HFLQERLRLKVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRN
HHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCC
RSQPNPVPECLLAGLGWVLCALRCQVSL
CCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]