Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 51893067

GI number: 51893067

Start: 2071610

End: 2072626

Strand: Reverse

Name: yvrC [H]

Synonym: STH1929

Alternate gene names: 51893067

Gene position: 2072626-2071610 (Counterclockwise)

Preceding gene: 51893068

Following gene: 51893066

Centisome position: 58.12

GC content: 69.22

Gene sequence:

>1017_bases
ATGAAGAAGCGTTCGCTGGCAGCCCTCATGCTTTCCCTTCTGCTCGTGGTCGGCATCCTGACAGGCTGCGCAGGCCGCCA
GACGGCGGTGAACCCGGACAGCCCGCCCGCAGCCCCGGCGGCTGAGTCGAGCGACCAGCCCGCAGACCGGGCGGCCGGCA
CGGGGAGCGCCGGGCAGGCCGAACCCCGGCAGACGGCCTACCCCCTCACGATTACCGACGGCGCCGGCCGGCAGGTGACC
ATCGCCGCCGAGCCGAGGCGGGTGATCTCCGTCGCCCCCTCCAACACGGAACTGATGTTCGCGCTCGGCAAGGGCGACCT
GCTGGTCGGGCGCTCCGACTGGGACGACTATCCCCCCGAGGCGCAGGAGATCGAGTCCATCGGCGGTTTCTACTCGCCCG
ACTACGAGAAGATCATCTCGCTGGAGCCCGACCTGCTCCTCCTGACCAGCGGCTCCGTGGAGGCGCGGGAGAAGCTGGAG
AACGATTATGGGCTCACCACCTTCGTGCTGAACCCCTCCAACTTTGAGGAGCTGTACGAGGGGATCCTCGCCCTGGGCCA
GGTGGTGAACGCCCAGGAGGCCGCGGAGGCGCTCGTGGCGGACATGCAGCGTGAGGTGGAGGCCATCGCCGGGAAGGTCG
CGCTGGCGGAGAACAGGCCCGTGGTGTTCTACCAGGTCTGGCACGATCCCATCACCACCGCCGGCCCGGGCTCCTTCATC
GACGACATGATCCGCATCGCCGGCGGCACCAACGCCGCATCCTTCGCCGGCGAGCCCTGGCCGGTTATCTCGCTGGAGGA
ACTGGTATCCGCAGACCCCGACATCATCGTCACCGCGTCGGAGGCCGCGGCCCGGGAGGTCCGGGAGCGGCCTGGCTGGG
AGTCGATCGCGGCGGTGAAGGAAGGCCGGGTGCTGGGGCTGCCGGATGAGAACATCGTGGTGCGCCCCGGCCCCCGCCTG
ATTCAGGGGCTCCAGTGGTTCGCCCGGAATCTCCACCCGGAGCTCTTCGAGCAGTGA

Upstream 100 bases:

>100_bases
GTCGCGCAGCTTCGATAGGACGATGGTTGGCGGATCTGCTTACCAGCCCTCAGCGGCATCTTCATTTAAGTAGAACAGTG
GACTTACGGAGGTACATCCC

Downstream 100 bases:

>100_bases
CCGGGCCGATGGGGCGCTTTCCCGAAGGGAGCGAGGCGATGCGCATGGCGGGTGTGATTCTGGTGCTAGGCGGCGCGCGG
AGCGGCAAGAGCCGCTGGGC

Product: iron ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKKRSLAALMLSLLLVVGILTGCAGRQTAVNPDSPPAAPAAESSDQPADRAAGTGSAGQAEPRQTAYPLTITDGAGRQVT
IAAEPRRVISVAPSNTELMFALGKGDLLVGRSDWDDYPPEAQEIESIGGFYSPDYEKIISLEPDLLLLTSGSVEAREKLE
NDYGLTTFVLNPSNFEELYEGILALGQVVNAQEAAEALVADMQREVEAIAGKVALAENRPVVFYQVWHDPITTAGPGSFI
DDMIRIAGGTNAASFAGEPWPVISLEELVSADPDIIVTASEAAAREVRERPGWESIAAVKEGRVLGLPDENIVVRPGPRL
IQGLQWFARNLHPELFEQ

Sequences:

>Translated_338_residues
MKKRSLAALMLSLLLVVGILTGCAGRQTAVNPDSPPAAPAAESSDQPADRAAGTGSAGQAEPRQTAYPLTITDGAGRQVT
IAAEPRRVISVAPSNTELMFALGKGDLLVGRSDWDDYPPEAQEIESIGGFYSPDYEKIISLEPDLLLLTSGSVEAREKLE
NDYGLTTFVLNPSNFEELYEGILALGQVVNAQEAAEALVADMQREVEAIAGKVALAENRPVVFYQVWHDPITTAGPGSFI
DDMIRIAGGTNAASFAGEPWPVISLEELVSADPDIIVTASEAAAREVRERPGWESIAAVKEGRVLGLPDENIVVRPGPRL
IQGLQWFARNLHPELFEQ
>Mature_338_residues
MKKRSLAALMLSLLLVVGILTGCAGRQTAVNPDSPPAAPAAESSDQPADRAAGTGSAGQAEPRQTAYPLTITDGAGRQVT
IAAEPRRVISVAPSNTELMFALGKGDLLVGRSDWDDYPPEAQEIESIGGFYSPDYEKIISLEPDLLLLTSGSVEAREKLE
NDYGLTTFVLNPSNFEELYEGILALGQVVNAQEAAEALVADMQREVEAIAGKVALAENRPVVFYQVWHDPITTAGPGSFI
DDMIRIAGGTNAASFAGEPWPVISLEELVSADPDIIVTASEAAAREVRERPGWESIAAVKEGRVLGLPDENIVVRPGPRL
IQGLQWFARNLHPELFEQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=196, Percent_Identity=29.5918367346939, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36169; Mature: 36169

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRSLAALMLSLLLVVGILTGCAGRQTAVNPDSPPAAPAAESSDQPADRAAGTGSAGQA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
EPRQTAYPLTITDGAGRQVTIAAEPRRVISVAPSNTELMFALGKGDLLVGRSDWDDYPPE
CCCCCCCCEEEECCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCC
AQEIESIGGFYSPDYEKIISLEPDLLLLTSGSVEAREKLENDYGLTTFVLNPSNFEELYE
HHHHHHHCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCHHHHHH
GILALGQVVNAQEAAEALVADMQREVEAIAGKVALAENRPVVFYQVWHDPITTAGPGSFI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCHHHH
DDMIRIAGGTNAASFAGEPWPVISLEELVSADPDIIVTASEAAAREVRERPGWESIAAVK
HHHHHHCCCCCCHHCCCCCCCEEEHHHHHCCCCCEEEECCHHHHHHHHHCCCHHHHHHHH
EGRVLGLPDENIVVRPGPRLIQGLQWFARNLHPELFEQ
CCCEEECCCCCEEECCCHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MKKRSLAALMLSLLLVVGILTGCAGRQTAVNPDSPPAAPAAESSDQPADRAAGTGSAGQA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
EPRQTAYPLTITDGAGRQVTIAAEPRRVISVAPSNTELMFALGKGDLLVGRSDWDDYPPE
CCCCCCCCEEEECCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCC
AQEIESIGGFYSPDYEKIISLEPDLLLLTSGSVEAREKLENDYGLTTFVLNPSNFEELYE
HHHHHHHCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCHHHHHH
GILALGQVVNAQEAAEALVADMQREVEAIAGKVALAENRPVVFYQVWHDPITTAGPGSFI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCHHHH
DDMIRIAGGTNAASFAGEPWPVISLEELVSADPDIIVTASEAAAREVRERPGWESIAAVK
HHHHHHCCCCCCHHCCCCCCCEEEHHHHHCCCCCEEEECCHHHHHHHHHCCCHHHHHHHH
EGRVLGLPDENIVVRPGPRLIQGLQWFARNLHPELFEQ
CCCEEECCCCCEEECCCHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]