Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51893061

Identifier: 51893061

GI number: 51893061

Start: 2066859

End: 2067197

Strand: Reverse

Name: 51893061

Synonym: STH1923

Alternate gene names: NA

Gene position: 2067197-2066859 (Counterclockwise)

Preceding gene: 51893062

Following gene: 51893060

Centisome position: 57.97

GC content: 73.16

Gene sequence:

>339_bases
GTGATCGTGCGCAACCTTACGCGCGGCCTTGTCCTGGGCGACCGGATCCGCCGGGCCGACACCTTCCGGCTGCGCCTGCT
CGGCCTCATGTTCCGCCCGGGGCTGGAGCCGGGCGAGGGGCTCTGGCTGGAGCCCTGCTGCCAGGTGCACACCCACTTCA
TGCGGTTCCCCCTGGACCTGCTCTTCCTGGACGCGGAAGGGCGGGTCCTGCGCGCGCTGGCGTCCTTTCCCCCGCGGCGC
ATCAGTCCGGCCGTTCCCGGAGCCCGGGCCGTGCTGGAACTCCCGGCCGGGGCGATGGGGGAGACCCGGCCGGGGGACCT
GGTGAGGGCTTTCCCATAG

Upstream 100 bases:

>100_bases
CCCACGGCGCACCGCCCACGGCGCACCGCCCACGGCGCACCGCCCACGGCGCATCGCCCACGGCCCACCGCTCACCGCTC
AAAGGGGAGGTCGACCGCCA

Downstream 100 bases:

>100_bases
CAGGAGTATTGGTTGCCCGCAGGGAATATTGTTACCGGCAATCCCCACAAGAGGTCTGCGAGTGGACCGGCGGGGACAGA
GCGCACAGCGGGCCGAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MIVRNLTRGLVLGDRIRRADTFRLRLLGLMFRPGLEPGEGLWLEPCCQVHTHFMRFPLDLLFLDAEGRVLRALASFPPRR
ISPAVPGARAVLELPAGAMGETRPGDLVRAFP

Sequences:

>Translated_112_residues
MIVRNLTRGLVLGDRIRRADTFRLRLLGLMFRPGLEPGEGLWLEPCCQVHTHFMRFPLDLLFLDAEGRVLRALASFPPRR
ISPAVPGARAVLELPAGAMGETRPGDLVRAFP
>Mature_112_residues
MIVRNLTRGLVLGDRIRRADTFRLRLLGLMFRPGLEPGEGLWLEPCCQVHTHFMRFPLDLLFLDAEGRVLRALASFPPRR
ISPAVPGARAVLELPAGAMGETRPGDLVRAFP

Specific function: Unknown

COG id: COG1430

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12500; Mature: 12500

Theoretical pI: Translated: 11.66; Mature: 11.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRNLTRGLVLGDRIRRADTFRLRLLGLMFRPGLEPGEGLWLEPCCQVHTHFMRFPLDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEE
LFLDAEGRVLRALASFPPRRISPAVPGARAVLELPAGAMGETRPGDLVRAFP
EEECCCCHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MIVRNLTRGLVLGDRIRRADTFRLRLLGLMFRPGLEPGEGLWLEPCCQVHTHFMRFPLDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEE
LFLDAEGRVLRALASFPPRRISPAVPGARAVLELPAGAMGETRPGDLVRAFP
EEECCCCHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA