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The map label for this gene is cydB [H]

Identifier: 51892829

GI number: 51892829

Start: 1838189

End: 1839226

Strand: Reverse

Name: cydB [H]

Synonym: STH1691

Alternate gene names: 51892829

Gene position: 1839226-1838189 (Counterclockwise)

Preceding gene: 51892830

Following gene: 51892828

Centisome position: 51.57

GC content: 72.25

Gene sequence:

>1038_bases
GTGACGAAAGGAGGTGGGCACGCCATGGAACCCTGGCTGGGACTGGACCCCGTGGCAGGCGTCGCAGGGGTGATGCTGCT
GGCCCTCATGGCCTACGCGGTCCTGGGCGGGGCGGACTTCGGCGGCGGCATCTGGGACCTGCTCGCCACCGGCCCCCGGC
GGGAGCAGCACCGCCAGGCCATCGCCAAGGCGATGGGTCCTGTCTGGGAGGCCAACCACGTGTGGCTGATCTTCGTTATC
GTCATCCTGTTTACGGTGTTCCCCACCGGGTACCGAGCCCTGGGCATCGCCTTCTTCGGGCTGTTCCACCTGGTCCTGGT
GGGCATCGTCCTCCGGGGGGCGGCCTTCGCCTTCCGGGCCGGCGCCTCCGTCGACTCCCGCCAGTGGCGGGTCTGGAGCC
CCGTCTTCGGCGGTGCGTCGGCCGTCACGCCCTTCCTGCTGGGGCTGGCCGCAGCCGCCGTCTCCGGCGGGGGGATCCGG
GTGGGCGCCGGCGGCGTCGTCCAGGTGGACCCGGGCCGGACCTGGTTCAGCCCGGTCTCCGTGATGATGGGCTTCCTCAC
GGTGGCCATGTGCGCATACCTCGCAGCCGTCTTCCTCACGGTGGAGACGCGCGGCGATCTGCAGGAAGACTTCCGGCGCC
GGGCGCTCGGATCCGGGGTCGTGCTGGCTCTCCTGGCGGCGGCGCTCCTGCCGCTCCTGCCCACCGGGATGCCCCAGCTC
TGGGCGCACTTTTCGCAGCCGCGCGCCGGCCCCCTGCTGCTGGCGGGCGCAGCCCTGGCCGTGCTGTCGGCTGCGGCCAT
CTACACCCGGCGCTACCTGGTCGCCCGGGTCTCCGCCGTCGGGCAGGTGATCCTCCTGCTCACCGGCTGGGCCCTCGGCC
AGTGGCCCTACCTCATCTACCCGGACGTCACGTTCCACGGCGCGGCGGCCTCCGGCCCCTCCGCCCGGTTCGTGCTCCAG
ACGCTGCCCTTCGGCCTGCTGGTGCTGCTGCCCTCGCTGTGGTTGCTCTTCCGGGTCTTCAAGACCGCGGTGCGCTGA

Upstream 100 bases:

>100_bases
CTTCAGGCAGCACCATGGCCCTGTCGATGGCGGGGTTCACGGCGCTTTACGCCGCGCTGGCGGCGGCCCTCGTCCTGCTG
CTCAACCGGCTGCGGCACGA

Downstream 100 bases:

>100_bases
CCCGGGGCGTTGGGCCCTCCGGGACGCAGCGGCCCGGCGCCTCTCGGTCCACCGTCGCACACCTTCCCCCGGGCTTTCGC
AAACGCCAGCGGTGACGTAT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTKGGGHAMEPWLGLDPVAGVAGVMLLALMAYAVLGGADFGGGIWDLLATGPRREQHRQAIAKAMGPVWEANHVWLIFVI
VILFTVFPTGYRALGIAFFGLFHLVLVGIVLRGAAFAFRAGASVDSRQWRVWSPVFGGASAVTPFLLGLAAAAVSGGGIR
VGAGGVVQVDPGRTWFSPVSVMMGFLTVAMCAYLAAVFLTVETRGDLQEDFRRRALGSGVVLALLAAALLPLLPTGMPQL
WAHFSQPRAGPLLLAGAALAVLSAAAIYTRRYLVARVSAVGQVILLLTGWALGQWPYLIYPDVTFHGAAASGPSARFVLQ
TLPFGLLVLLPSLWLLFRVFKTAVR

Sequences:

>Translated_345_residues
MTKGGGHAMEPWLGLDPVAGVAGVMLLALMAYAVLGGADFGGGIWDLLATGPRREQHRQAIAKAMGPVWEANHVWLIFVI
VILFTVFPTGYRALGIAFFGLFHLVLVGIVLRGAAFAFRAGASVDSRQWRVWSPVFGGASAVTPFLLGLAAAAVSGGGIR
VGAGGVVQVDPGRTWFSPVSVMMGFLTVAMCAYLAAVFLTVETRGDLQEDFRRRALGSGVVLALLAAALLPLLPTGMPQL
WAHFSQPRAGPLLLAGAALAVLSAAAIYTRRYLVARVSAVGQVILLLTGWALGQWPYLIYPDVTFHGAAASGPSARFVLQ
TLPFGLLVLLPSLWLLFRVFKTAVR
>Mature_344_residues
TKGGGHAMEPWLGLDPVAGVAGVMLLALMAYAVLGGADFGGGIWDLLATGPRREQHRQAIAKAMGPVWEANHVWLIFVIV
ILFTVFPTGYRALGIAFFGLFHLVLVGIVLRGAAFAFRAGASVDSRQWRVWSPVFGGASAVTPFLLGLAAAAVSGGGIRV
GAGGVVQVDPGRTWFSPVSVMMGFLTVAMCAYLAAVFLTVETRGDLQEDFRRRALGSGVVLALLAAALLPLLPTGMPQLW
AHFSQPRAGPLLLAGAALAVLSAAAIYTRRYLVARVSAVGQVILLLTGWALGQWPYLIYPDVTFHGAAASGPSARFVLQT
LPFGLLVLLPSLWLLFRVFKTAVR

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36489; Mature: 36358

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGGGHAMEPWLGLDPVAGVAGVMLLALMAYAVLGGADFGGGIWDLLATGPRREQHRQA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHH
IAKAMGPVWEANHVWLIFVIVILFTVFPTGYRALGIAFFGLFHLVLVGIVLRGAAFAFRA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GASVDSRQWRVWSPVFGGASAVTPFLLGLAAAAVSGGGIRVGAGGVVQVDPGRTWFSPVS
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHH
VMMGFLTVAMCAYLAAVFLTVETRGDLQEDFRRRALGSGVVLALLAAALLPLLPTGMPQL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
WAHFSQPRAGPLLLAGAALAVLSAAAIYTRRYLVARVSAVGQVILLLTGWALGQWPYLIY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
PDVTFHGAAASGPSARFVLQTLPFGLLVLLPSLWLLFRVFKTAVR
CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKGGGHAMEPWLGLDPVAGVAGVMLLALMAYAVLGGADFGGGIWDLLATGPRREQHRQA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHH
IAKAMGPVWEANHVWLIFVIVILFTVFPTGYRALGIAFFGLFHLVLVGIVLRGAAFAFRA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GASVDSRQWRVWSPVFGGASAVTPFLLGLAAAAVSGGGIRVGAGGVVQVDPGRTWFSPVS
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHH
VMMGFLTVAMCAYLAAVFLTVETRGDLQEDFRRRALGSGVVLALLAAALLPLLPTGMPQL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
WAHFSQPRAGPLLLAGAALAVLSAAAIYTRRYLVARVSAVGQVILLLTGWALGQWPYLIY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
PDVTFHGAAASGPSARFVLQTLPFGLLVLLPSLWLLFRVFKTAVR
CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]