Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is nudG [C]

Identifier: 51892519

GI number: 51892519

Start: 1528825

End: 1529580

Strand: Reverse

Name: nudG [C]

Synonym: STH1381

Alternate gene names: 51892519

Gene position: 1529580-1528825 (Counterclockwise)

Preceding gene: 51892529

Following gene: 51892516

Centisome position: 42.89

GC content: 68.78

Gene sequence:

>756_bases
ATGGTTCACCTGCGGGAGACCTACCGGGCAAAACCGGGAAGGACCGACGCGCTGGCCCGGGTGCTGTCGGATCGACTCAT
CCCCGCTTGTGTGAAGCACGGGGCCGCGCTGATCGGATGGTGGGTCGCCCCGGCGGATGGAGAGATGGTGATCATCTGGG
ACTGTCCCCAGCTTGCCGAGCACCGGCGGATCATCGCAGAGGCGCGCCGGGATCCGCTGTGGCCGGAGGATGGCTGGACG
GACGAACTGGTGGAAACGCGCCGGGAAGAGCTGCTGGAGCCCATGGATCGGTACGGCCCGCCACGCCACACCCTGGCGGT
CTCCGGCTTCATCGCCGATGGCGAAGGACGGGTTCTGCTGGTTCGTACCCGCCTGCGCAGCGACACCTGGGAGCTGCCCG
GGGGGCAGGTGGAGGCGGGTGAGGACCCGGTGACCGCCCTGGTGCGGGAGATCCGGGAGGAGACCGGGATTGAGGCCGAG
ATCCAGGGCCTGACCGGGGTGTATTACTCCACCGCCCGGGGCAGGGTCTGCAACCTGGTTTTCCGGGGCGTCGCGGTAGG
CGGACGGCTGTCCTCCTCTCCGGAGACCTTGGAAGCGGCCTTCGTCCAACTCCGTGCAGACACCGTAAGCCAGTGGGTAA
CCCGCCCCCACTTCCAGGTGCGGGTGACCGACGCCCTGGGCGCCCACACCTTGCCCTACGAAACGTACAGGCTGCGGCCC
TACGCCCGGCTGCTGCGGCTCAGCGGCCAGCACTGA

Upstream 100 bases:

>100_bases
CGCCCAGGAGACCCGGCGTACCTGCTGCGGGAGCAGTGTGCGACTTGCCAGCCGCCCGGGACGTCCGATTGCGTAGATTT
GGGGATGGAGGTATGCGACG

Downstream 100 bases:

>100_bases
CGGGTGTGACCGCCGCCAATTACCGGCGCCGGCTGGAGTACCGTGCGGAACGGGTGCGGGCCGCCTGGACCCAGTTGCCG
CGGGGCGGCTTCCCGCCCCC

Product: hypothetical protein

Products: CMP; diphosphate [C]

Alternate protein names: ORF154 [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MVHLRETYRAKPGRTDALARVLSDRLIPACVKHGAALIGWWVAPADGEMVIIWDCPQLAEHRRIIAEARRDPLWPEDGWT
DELVETRREELLEPMDRYGPPRHTLAVSGFIADGEGRVLLVRTRLRSDTWELPGGQVEAGEDPVTALVREIREETGIEAE
IQGLTGVYYSTARGRVCNLVFRGVAVGGRLSSSPETLEAAFVQLRADTVSQWVTRPHFQVRVTDALGAHTLPYETYRLRP
YARLLRLSGQH

Sequences:

>Translated_251_residues
MVHLRETYRAKPGRTDALARVLSDRLIPACVKHGAALIGWWVAPADGEMVIIWDCPQLAEHRRIIAEARRDPLWPEDGWT
DELVETRREELLEPMDRYGPPRHTLAVSGFIADGEGRVLLVRTRLRSDTWELPGGQVEAGEDPVTALVREIREETGIEAE
IQGLTGVYYSTARGRVCNLVFRGVAVGGRLSSSPETLEAAFVQLRADTVSQWVTRPHFQVRVTDALGAHTLPYETYRLRP
YARLLRLSGQH
>Mature_251_residues
MVHLRETYRAKPGRTDALARVLSDRLIPACVKHGAALIGWWVAPADGEMVIIWDCPQLAEHRRIIAEARRDPLWPEDGWT
DELVETRREELLEPMDRYGPPRHTLAVSGFIADGEGRVLLVRTRLRSDTWELPGGQVEAGEDPVTALVREIREETGIEAE
IQGLTGVYYSTARGRVCNLVFRGVAVGGRLSSSPETLEAAFVQLRADTVSQWVTRPHFQVRVTDALGAHTLPYETYRLRP
YARLLRLSGQH

Specific function: Specific For Pyrimidine Substrates. Acts On 5-Methyl- Dctp, Ctp And Dctp In Decreasing Order. [C]

COG id: COG1051

COG function: function code F; ADP-ribose pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 28237; Mature: 28237

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHLRETYRAKPGRTDALARVLSDRLIPACVKHGAALIGWWVAPADGEMVIIWDCPQLAE
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCHHHHH
HRRIIAEARRDPLWPEDGWTDELVETRREELLEPMDRYGPPRHTLAVSGFIADGEGRVLL
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEE
VRTRLRSDTWELPGGQVEAGEDPVTALVREIREETGIEAEIQGLTGVYYSTARGRVCNLV
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCHHHHHH
FRGVAVGGRLSSSPETLEAAFVQLRADTVSQWVTRPHFQVRVTDALGAHTLPYETYRLRP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCCH
YARLLRLSGQH
HHHHHHHCCCC
>Mature Secondary Structure
MVHLRETYRAKPGRTDALARVLSDRLIPACVKHGAALIGWWVAPADGEMVIIWDCPQLAE
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCHHHHH
HRRIIAEARRDPLWPEDGWTDELVETRREELLEPMDRYGPPRHTLAVSGFIADGEGRVLL
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEE
VRTRLRSDTWELPGGQVEAGEDPVTALVREIREETGIEAEIQGLTGVYYSTARGRVCNLV
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCHHHHHH
FRGVAVGGRLSSSPETLEAAFVQLRADTVSQWVTRPHFQVRVTDALGAHTLPYETYRLRP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCCH
YARLLRLSGQH
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe; Mn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: CTP; H2O [C]

Specific reaction: CTP + H2O = CMP + diphosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934842 [H]