Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51892429

Identifier: 51892429

GI number: 51892429

Start: 1428356

End: 1428955

Strand: Reverse

Name: 51892429

Synonym: STH1291

Alternate gene names: NA

Gene position: 1428955-1428356 (Counterclockwise)

Preceding gene: 51892431

Following gene: 51892428

Centisome position: 40.07

GC content: 59.17

Gene sequence:

>600_bases
TTGCACGAAGTCCGGGTTATTCACGCGAAACTTGAGCTAGAGGGGCTGTTCGAGTTTCTCGATGACGTCTTGACGCATGT
GGCAACGCAGACGACACAACACGAACGACTGCGCTTCTGGCTGCGGGAATCGACGCGGAGCGCCTATGATGCACCGAGCC
ATCCGGCCGTCCCGTTTCTCTCCAAGCCCCCTGCGGATACGGTTGTTTTGTTGGGCTACGTTCGAAGCCCGGAACATCTC
CGTTGGATCCATGAGCAACGCCTGTACAACATGCGGACTGGTGGACGACGAGGCAGCGTACTGCCGGGTTCCCGGGTGTT
GTCCGCGGAGTTGGTGGTCCTGTATGGGCCACATATGAGGACAGCTGAGATGTGGAGGGTTGCAGGAACGCCCCTGATGC
TGAGCGAGGAAGAGGTGCGGGAGCTCCATTATCCAACCCCGCGCGGACGTTACGTATGCCTTCCCTTGGAACCGCTTCCG
TCGGTCGAGTTGCTGCAGAAGATGTCCAGCGACCACGTGAGAAGGGTAAAGGAAAGGCTGAGTCCGACGTCGTACCCCGG
GGAACCCGTTGCGGTGACCTGGTTCGAGTTGCTCCAGTAA

Upstream 100 bases:

>100_bases
TGAGACTGCATCAGTCGAACCTCCACATGGTGGATTGGGAGCGGCCACACTCCCACCATGTATCATTGGTTCTGACTGAT
GCTTTTTCAATGGGTTTCCA

Downstream 100 bases:

>100_bases
GCGCAGACACCCCTGCCTCTGCTGACCCAGAGGCAGGGGTACTTATCCAGCGTTTCGCTACTCTACTCGTTCGGGGGACT
GTGGCCATGACACGCGAATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MHEVRVIHAKLELEGLFEFLDDVLTHVATQTTQHERLRFWLRESTRSAYDAPSHPAVPFLSKPPADTVVLLGYVRSPEHL
RWIHEQRLYNMRTGGRRGSVLPGSRVLSAELVVLYGPHMRTAEMWRVAGTPLMLSEEEVRELHYPTPRGRYVCLPLEPLP
SVELLQKMSSDHVRRVKERLSPTSYPGEPVAVTWFELLQ

Sequences:

>Translated_199_residues
MHEVRVIHAKLELEGLFEFLDDVLTHVATQTTQHERLRFWLRESTRSAYDAPSHPAVPFLSKPPADTVVLLGYVRSPEHL
RWIHEQRLYNMRTGGRRGSVLPGSRVLSAELVVLYGPHMRTAEMWRVAGTPLMLSEEEVRELHYPTPRGRYVCLPLEPLP
SVELLQKMSSDHVRRVKERLSPTSYPGEPVAVTWFELLQ
>Mature_199_residues
MHEVRVIHAKLELEGLFEFLDDVLTHVATQTTQHERLRFWLRESTRSAYDAPSHPAVPFLSKPPADTVVLLGYVRSPEHL
RWIHEQRLYNMRTGGRRGSVLPGSRVLSAELVVLYGPHMRTAEMWRVAGTPLMLSEEEVRELHYPTPRGRYVCLPLEPLP
SVELLQKMSSDHVRRVKERLSPTSYPGEPVAVTWFELLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22952; Mature: 22952

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEVRVIHAKLELEGLFEFLDDVLTHVATQTTQHERLRFWLRESTRSAYDAPSHPAVPFL
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SKPPADTVVLLGYVRSPEHLRWIHEQRLYNMRTGGRRGSVLPGSRVLSAELVVLYGPHMR
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCCCC
TAEMWRVAGTPLMLSEEEVRELHYPTPRGRYVCLPLEPLPSVELLQKMSSDHVRRVKERL
HHHHHHHCCCCEEECHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
SPTSYPGEPVAVTWFELLQ
CCCCCCCCCCEEHHHHHHC
>Mature Secondary Structure
MHEVRVIHAKLELEGLFEFLDDVLTHVATQTTQHERLRFWLRESTRSAYDAPSHPAVPFL
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SKPPADTVVLLGYVRSPEHLRWIHEQRLYNMRTGGRRGSVLPGSRVLSAELVVLYGPHMR
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCCCC
TAEMWRVAGTPLMLSEEEVRELHYPTPRGRYVCLPLEPLPSVELLQKMSSDHVRRVKERL
HHHHHHHCCCCEEECHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
SPTSYPGEPVAVTWFELLQ
CCCCCCCCCCEEHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA