| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is yqjP [H]
Identifier: 51892123
GI number: 51892123
Start: 1103086
End: 1104081
Strand: Reverse
Name: yqjP [H]
Synonym: STH985
Alternate gene names: 51892123
Gene position: 1104081-1103086 (Counterclockwise)
Preceding gene: 51892127
Following gene: 51892120
Centisome position: 30.96
GC content: 72.09
Gene sequence:
>996_bases GTGCGTGCGGAGCCCCCGCCCTACCAGCCGCCCGCCGAGGTGAGCCCCGGCATCTTCCTGGTGCCCATCCCCATCCCGAT TCCCCTGCGGTACGTCAACTGCTACCTGTTGCGAGGACCCTCGGGTTGGACCCTGGTCGACACCGGCTTCCACGACAGCC TGGCCGAGGCCGCCTGGCCCCGCGCCCTTGCGCACCTGGCCATTCGCGCGCAGGACATCAAGCAGATCGTGCTGACTCAC TACCACCCGGATCACGTGGGCGCGGCCGGCTGGCTGCAGCAGCTCACCGGCGCCCCGGCCTTCCTGCCGGAGACCGAGAT GGAGCAGTTCCACCGGTTCTGGGCGGACGGGACCGGGGCCATGGCGGAGCGGCTCCAGGCGCTCTTCCTCGGGGAAGGGA TGGACGAGGCCACTGCGAGCGCCCTCCGCCGGCACCACCTCCAGCAGGTGGAGCGGGTCCGACCGCTCCCGGAGCTACGG CCGCTGGCAATCGACAGCCGGATCGCCATGGGCGACGGCACCTATGAGGTGATCTGGACGCCGGGCCACTCCGACGGGCT GGCGGTCTTCTGGGACGCGCGGCGTTCGATCCTGCTGGCCAACGATATGCTGCTCAGCGGCATCACACCCAACGTGTCGG TGTGGCCCGGCAGCCGCCCGAACCCGCTGGCCGACTACCTGGCGTCGCTCCGGCGGGTGGCCGCCCTGGGCGCCCGACTT GCGCTGCCGGGCCACCGGGCCCTGATCCGCGACGTGGCCGGGCGTGCCCGGGAGATCCTGGCCCACCACGCCGAAAGGCT GGCCAGGGTGACGGACGCGGCCGCAGCCTCCCCGGGCGGCGCCACGGCGTGGGAGATCTGTCGGCGGATCTTCCCGGTGG ACGGCCTGACGCTGCACCAGGTCCGCTTCGCCATGGCGGAGACGCTGGCGCACCTGGTCTATCTCTGCCGCGAGGGGCGG CTGCGAAAGGAGGGCATGCGCTACCTGCGGGCATGA
Upstream 100 bases:
>100_bases GGCGCGGTGTATCGTCGAAAAGGACACAACCTTGACGTGACTCTATTCTCCCTGGGTCCACCGTCGCCTGCCGGATCCGC GAGAGGAGGAGGCCGAGACC
Downstream 100 bases:
>100_bases GCTTCGGGCGCCGCCGGCCGGCGTCCACCCGGAGAAGCCCGATGCGGTGTAATCGAGTAGGAGGGGGCGGCTAGCCCCCG TCCTCTCACACCACCGGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR LRKEGMRYLRA
Sequences:
>Translated_331_residues MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR LRKEGMRYLRA >Mature_331_residues MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWPRALAHLAIRAQDIKQIVLTH YHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGAMAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELR PLAIDSRIAMGDGTYEVIWTPGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQVRFAMAETLAHLVYLCREGR LRKEGMRYLRA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787158, Length=135, Percent_Identity=34.8148148148148, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 36603; Mature: 36603
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWP CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCHHHHHHHHHH RALAHLAIRAQDIKQIVLTHYHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGA HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH MAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELRPLAIDSRIAMGDGTYEVIWT HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCEEEEEC PGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL CCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH VRFAMAETLAHLVYLCREGRLRKEGMRYLRA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure MRAEPPPYQPPAEVSPGIFLVPIPIPIPLRYVNCYLLRGPSGWTLVDTGFHDSLAEAAWP CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCHHHHHHHHHH RALAHLAIRAQDIKQIVLTHYHPDHVGAAGWLQQLTGAPAFLPETEMEQFHRFWADGTGA HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHH MAERLQALFLGEGMDEATASALRRHHLQQVERVRPLPELRPLAIDSRIAMGDGTYEVIWT HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECCCCEEEEEC PGHSDGLAVFWDARRSILLANDMLLSGITPNVSVWPGSRPNPLADYLASLRRVAALGARL CCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH ALPGHRALIRDVAGRAREILAHHAERLARVTDAAAASPGGATAWEICRRIFPVDGLTLHQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHH VRFAMAETLAHLVYLCREGRLRKEGMRYLRA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]