| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is phoR [H]
Identifier: 51891981
GI number: 51891981
Start: 952917
End: 955430
Strand: Reverse
Name: phoR [H]
Synonym: STH843
Alternate gene names: 51891981
Gene position: 955430-952917 (Counterclockwise)
Preceding gene: 51891982
Following gene: 51891980
Centisome position: 26.79
GC content: 67.58
Gene sequence:
>2514_bases ATGAGCGAATCGCCCTACCGCTGGGACACCGGCCTGCGACTGCGCGTCTTCGGCCTGCTGCTTTTCCTGCTCTCCCTCCT GGTCGGGCTGGGGATCATCCTCACCTTCACGTTCACCCAGCTCAACTCGTTCCAGGAGCGGGCCAGGCTCACCCAGGAGA ACGTGCGGCGCGCGGAGCAGGTGGCCACGCTCTACGCCGAGATGACGGCCGCCCTGCGGGGTTACCTGTTCACCGGTGAC GAGTCGATGCTGGCGCCGTACGAGCCCAACCTCAACCGGCTGCACCAGGTGCTGTCGGAACTGGAGGAGAGCGTCGAGGG CGACCCCGATCAGGCTGAGCAAGTGCACAGGCTGCGGGAACTGATCGACGCCTGGCGGACCCAGGTGGCCGAGCCGGAGA TCGCACGTATGCGGCAGGGCGCCCCCGACGTGGGCAGCCTGCTCATGACCGAAGGCGTCAAGTACGGCGAGCTGATCAAG GAGCAGCGGGACCACTTCATCCGGGAAGAGACCAAGCGCATGGACCAGGACGTGGATAAGGCGGGCGTCGCCTCCGACCA GGTGGTCCGGATCACATGGCTGACCATCTCGCTGGCGGCGGTACTGGTCCTCGGCGGCTTTCTGGTCTTCGCCCGGAGCG TGACCCGCTCCACGGAGGCCCTGGCCGAGGCGGCCAACCGGATCGCCCAGGGCGAGCGCGGGGTGGTGCTGGAAGCGCCG CTGGACGGCGAGCTGCAGGTGGTGGCCAACGCATTCGCCAAGATGTCCCTCACGCTGGCCGAACAGGAGAAGCAACTGCA GGAACAGCAGGAGCAGCTCATCGCCCAGAACGAGGAACTGCTGGCCCAGCAGGAGTCGGTGCGGCGGCATGCCGAGGAAC TGGAGCGCAAGGAGCGGCATCTCAGCCGGCTGCACAGCCTGTCCAGCAAGATGGTCGGCTCCATCGAGATGGACCAGCTG GCCAACCTGATCCTGGACGAGTACCTGGACCTGTACGGGGGCGTCGCGGGCGCCCTGCTGCTCGTCGACGAGTACGCCGA CCGGCTGAAGGTGGCCGCGGAGCGCTGGCTTTCGCCGGACCTGAAGGGCCAGTTCATCCCCCGTTCGGGACCCATGGCCC GCTGCGTCGAGCAGCGTGAGGTCGTGGTGGCCCGCTACCCTGACACGCAGACCCACATCTCCGTCTGGCTCCGGGACGTG CCGGTGGTCCAGGAGGTCTATGTGCCGCTGGTTCACACCGGCCGGGCCATCGGCGTGGTGGCCATCGCCTTCACCGAGCC GACGGAGCTGAACGCCGAGGCGCAGGCGCTCTGGCACGCCGTGGCGGGACAAGCCTCTGTGGCGCTCGCCGCGGCCCAGA ACCACCAGGAAGTGAAGCGGGCCTTCGCTGCGCTGCAGGACCAGGCGGCGCAGATCGAGATCCTCAACGCCCAGCTGGAG GAGGAGCGCGACCGGGCCTCGGCGCAGCTGGACATCTACCTCTCCATCGTCTCGACCATGCCGGCAGGCGCCTGGCTCTG CGACACCGGCGGGAACCTGCTGGTGTCCAACTCGATGTTCCAGGAGTTCTTCGGCAAGACGGTGCCGGACGAGCCCCTGG AGCAGATGCTGGCGCAGATCGCCGCCGTCCTGCCCGAAGACGACCCGTTCCCGCAGACCGTGCGCGACCTCGTCCACGAT CCCCAGGCGGTGGCCGAGGGGCAGCTGCGGCTCACCACCGGCTACACGCTGCAGTGGTCGTCGGCCCCCGTGGGCAAGGG CCAGAGCCGTGTCGGCCGCCTGTTCACGTTCCAGGACGTCACCGAGCTGGCCGAACTGGACCGGCTGAAGTCCGAGTTCG TCAACACGGTCTCTCACGAGCTGCGCACGCCGCTCACGTCCATCATGGGGTACCTGAGCCTGGTGCTGGCGGGGACGGCC GGACCGCTTCAGGAGCAGCAGCGGGAGTTCCTGAATATCGTCGCCCGGAACACCAACCGGCTCGCCAACCTGATCAACGA CCTGCTGGACATTCAGCGGATCGAGTCCGGGCGCATGCCCATCCACCTCTCCCCCACCTCCCTCGCCAGCGTGGTCAAGC AGGTGGCGGAGACCTTCCGGGTGCAGGCCGAGCAGAAGGGGCTTTCGTTCACGGTCAACGTGCCGGAGGAGGTGCCGCTG ATCAACGCCGACCCCGACCGCCTGACCCAGATCATCGCCAACCTGGTTTCCAACGCGGTCAAGTACACCAAAGAAGGCGG CGTGACCGTGTCGGTCTCCGCCGTGGGCGACCAGGTGGAGCTGGAGGTGGCCGATACGGGCATCGGCATCTCCCCCGCCG ATCAGAAGCGGATCTTCGAGAAGTTCTACCGCGCGGAACATCCGTACGTCCGCGAGGTGGGCGGCACCGGCCTGGGCCTG CCCATCGTGAAGACGATGGTGGAGGAGCACGGCGGGGACCTGCAGCTGGAGAGCCAACCGGGCCGGGGGTCGCGCTTCAT CGTGAGCTTCCCGGCTTTGAAGGACGAATCGTGA
Upstream 100 bases:
>100_bases AGGCCGATGTGCAGGCCGGCATCGCAGCAGGCGCCGCGGCCTACCTCGTCAAGCCGTTTGAACTCGATCACCTGATCCGC ACGGTCAAGGAGGCGGTCGG
Downstream 100 bases:
>100_bases GACGGGGAGGGCGCGACCGATGGCCGATGACCTGGAGGCGCTGCTTCTGCATGCGTTCATCGACCTGATCGAAGAGCGGA AGGCGGCCGGCCGCCGGGAG
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 836
Protein sequence:
>837_residues MSESPYRWDTGLRLRVFGLLLFLLSLLVGLGIILTFTFTQLNSFQERARLTQENVRRAEQVATLYAEMTAALRGYLFTGD ESMLAPYEPNLNRLHQVLSELEESVEGDPDQAEQVHRLRELIDAWRTQVAEPEIARMRQGAPDVGSLLMTEGVKYGELIK EQRDHFIREETKRMDQDVDKAGVASDQVVRITWLTISLAAVLVLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAP LDGELQVVANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERHLSRLHSLSSKMVGSIEMDQL ANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPDLKGQFIPRSGPMARCVEQREVVVARYPDTQTHISVWLRDV PVVQEVYVPLVHTGRAIGVVAIAFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLE EERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQIAAVLPEDDPFPQTVRDLVHD PQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTELAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTA GPLQEQQREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPL INADPDRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVELEVADTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGL PIVKTMVEEHGGDLQLESQPGRGSRFIVSFPALKDES
Sequences:
>Translated_837_residues MSESPYRWDTGLRLRVFGLLLFLLSLLVGLGIILTFTFTQLNSFQERARLTQENVRRAEQVATLYAEMTAALRGYLFTGD ESMLAPYEPNLNRLHQVLSELEESVEGDPDQAEQVHRLRELIDAWRTQVAEPEIARMRQGAPDVGSLLMTEGVKYGELIK EQRDHFIREETKRMDQDVDKAGVASDQVVRITWLTISLAAVLVLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAP LDGELQVVANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERHLSRLHSLSSKMVGSIEMDQL ANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPDLKGQFIPRSGPMARCVEQREVVVARYPDTQTHISVWLRDV PVVQEVYVPLVHTGRAIGVVAIAFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLE EERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQIAAVLPEDDPFPQTVRDLVHD PQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTELAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTA GPLQEQQREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPL INADPDRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVELEVADTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGL PIVKTMVEEHGGDLQLESQPGRGSRFIVSFPALKDES >Mature_836_residues SESPYRWDTGLRLRVFGLLLFLLSLLVGLGIILTFTFTQLNSFQERARLTQENVRRAEQVATLYAEMTAALRGYLFTGDE SMLAPYEPNLNRLHQVLSELEESVEGDPDQAEQVHRLRELIDAWRTQVAEPEIARMRQGAPDVGSLLMTEGVKYGELIKE QRDHFIREETKRMDQDVDKAGVASDQVVRITWLTISLAAVLVLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAPL DGELQVVANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERHLSRLHSLSSKMVGSIEMDQLA NLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPDLKGQFIPRSGPMARCVEQREVVVARYPDTQTHISVWLRDVP VVQEVYVPLVHTGRAIGVVAIAFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLEE ERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQIAAVLPEDDPFPQTVRDLVHDP QAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTELAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAG PLQEQQREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLI NADPDRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVELEVADTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGLP IVKTMVEEHGGDLQLESQPGRGSRFIVSFPALKDES
Specific function: Member of the two-component regulatory system phoP/phoR involved in the alkaline phosphatase genes regulation. PhoR may function as a membrane-associated protein kinase that phosphorylates phoP in response to environmental signals [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=228, Percent_Identity=41.2280701754386, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI48994928, Length=410, Percent_Identity=29.5121951219512, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI1788713, Length=381, Percent_Identity=27.8215223097113, Blast_Score=144, Evalue=3e-35, Organism=Escherichia coli, GI145693157, Length=245, Percent_Identity=34.6938775510204, Blast_Score=142, Evalue=1e-34, Organism=Escherichia coli, GI1786600, Length=346, Percent_Identity=31.7919075144509, Blast_Score=135, Evalue=9e-33, Organism=Escherichia coli, GI87081816, Length=225, Percent_Identity=31.5555555555556, Blast_Score=117, Evalue=4e-27, Organism=Escherichia coli, GI1790346, Length=238, Percent_Identity=33.6134453781513, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1786912, Length=234, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1790436, Length=218, Percent_Identity=32.1100917431193, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1788393, Length=243, Percent_Identity=29.2181069958848, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI87082128, Length=234, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1788549, Length=254, Percent_Identity=28.740157480315, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1786783, Length=229, Percent_Identity=29.2576419213974, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI1790861, Length=208, Percent_Identity=31.25, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1787894, Length=248, Percent_Identity=27.8225806451613, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1788279, Length=214, Percent_Identity=26.6355140186916, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI1790300, Length=240, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1789808, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 92727; Mature: 92595
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESPYRWDTGLRLRVFGLLLFLLSLLVGLGIILTFTFTQLNSFQERARLTQENVRRAEQ CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VATLYAEMTAALRGYLFTGDESMLAPYEPNLNRLHQVLSELEESVEGDPDQAEQVHRLRE HHHHHHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LIDAWRTQVAEPEIARMRQGAPDVGSLLMTEGVKYGELIKEQRDHFIREETKRMDQDVDK HHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVASDQVVRITWLTISLAAVLVLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAP CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC LDGELQVVANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LSRLHSLSSKMVGSIEMDQLANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPD HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC LKGQFIPRSGPMARCVEQREVVVARYPDTQTHISVWLRDVPVVQEVYVPLVHTGRAIGVV CCCCCCCCCCHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEE AIAFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLE EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH EERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQI HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHH AAVLPEDDPFPQTVRDLVHDPQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDV HHHCCCCCCCHHHHHHHHCCCHHHHCCCEEEEECEEEEECCCCCCCCHHHHHHHHHHHHH TELAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQEQQREFLNIVARNTNR HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHH LANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPL HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC INADPDRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVELEVADTGIGISPADQKRIFE CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH KFYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGSRFIVSFPALKDES HHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCC >Mature Secondary Structure SESPYRWDTGLRLRVFGLLLFLLSLLVGLGIILTFTFTQLNSFQERARLTQENVRRAEQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VATLYAEMTAALRGYLFTGDESMLAPYEPNLNRLHQVLSELEESVEGDPDQAEQVHRLRE HHHHHHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LIDAWRTQVAEPEIARMRQGAPDVGSLLMTEGVKYGELIKEQRDHFIREETKRMDQDVDK HHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVASDQVVRITWLTISLAAVLVLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAP CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC LDGELQVVANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LSRLHSLSSKMVGSIEMDQLANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPD HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC LKGQFIPRSGPMARCVEQREVVVARYPDTQTHISVWLRDVPVVQEVYVPLVHTGRAIGVV CCCCCCCCCCHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEE AIAFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLE EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH EERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQI HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHH AAVLPEDDPFPQTVRDLVHDPQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDV HHHCCCCCCCHHHHHHHHCCCHHHHCCCEEEEECEEEEECCCCCCCCHHHHHHHHHHHHH TELAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQEQQREFLNIVARNTNR HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHH LANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPL HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC INADPDRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVELEVADTGIGISPADQKRIFE CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH KFYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGSRFIVSFPALKDES HHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3142862; 9387221; 9384377 [H]