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The map label for this gene is rimM

Identifier: 50842920

GI number: 50842920

Start: 1557962

End: 1558501

Strand: Reverse

Name: rimM

Synonym: PPA1441

Alternate gene names: 50842920

Gene position: 1558501-1557962 (Counterclockwise)

Preceding gene: 50842921

Following gene: 50842919

Centisome position: 60.87

GC content: 58.52

Gene sequence:

>540_bases
GTGGAAGAGTCGGCAACGGTGGAGGTCGTCGTCGGACGAGTAGGTCGTGCCCATGGTCTGCGAGGTGACGTCGTCGTTGA
GGTGCGTACGGACGAACCAGATGCGAGGTTTGGAGTAGGTGCCACGGTGCAGATTGAGGGGTCCAGACGTGATCTGACGG
TTGTACGGTCCCGCTGGGCCAAGGGCTGCCTTATCGTCGCTTTTGACGAAGTGAAAGATCGTCAGGGGGCAGAGGAGCTA
CGCGGATCGGTTCTCGTCGTTGACGTTGAGCCCAACGATGACCCCGATGACCCCGATGAATTCTGGGATCGCCGGTTGCG
TGGGCTGACAGTGGTTGATGAATCAGGTAAAAGCCGCGGGGCTGTCAAAGATGTGCTTCATATGCCAGCCCAAGATGTGC
TCGTGATCGACGTAAGTGGGGAGGAACATCTGGTTCCTTTCGTCCACCAACTCGTCCCTACTGTCGATGTGGCGTCCGGG
CGGATCGTCGTCAGTGGCATTCCTGGCTTGCTCGATTCGAACGCTGAAGAGGCGAGGTGA

Upstream 100 bases:

>100_bases
GTCCTTTGACAATATGGGCCGTGGTTCCGCTCTGGCGGGGCTGCGGCCCATGTGCTGTGTCTGGCATCTTGTCTAATCTC
ATCATTCCCCAGGAGTCACA

Downstream 100 bases:

>100_bases
CGATGAGGCTGGACTACCTGTCAATTTTTCCGGCGTACTTTGATGTCCTCGACATATCTTTGCTGGGTAAGGCGGCAGTC
AACGGTCTGGTGGAGGTCCA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MEESATVEVVVGRVGRAHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQGAEEL
RGSVLVVDVEPNDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLVIDVSGEEHLVPFVHQLVPTVDVASG
RIVVSGIPGLLDSNAEEAR

Sequences:

>Translated_179_residues
MEESATVEVVVGRVGRAHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQGAEEL
RGSVLVVDVEPNDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLVIDVSGEEHLVPFVHQLVPTVDVASG
RIVVSGIPGLLDSNAEEAR
>Mature_179_residues
MEESATVEVVVGRVGRAHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQGAEEL
RGSVLVVDVEPNDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLVIDVSGEEHLVPFVHQLVPTVDVASG
RIVVSGIPGLLDSNAEEAR

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROAC (Q6A7S6)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_056147.1
- ProteinModelPortal:   Q6A7S6
- SMR:   Q6A7S6
- GeneID:   2931821
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1441
- NMPDR:   fig|267747.1.peg.1424
- HOGENOM:   HBG703775
- OMA:   DEEDAWY
- ProtClustDB:   CLSK2763980
- BioCyc:   PACN267747:PPA1441-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19440; Mature: 19440

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEESATVEVVVGRVGRAHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWA
CCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHC
KGCLIVAFDEVKDRQGAEELRGSVLVVDVEPNDDPDDPDEFWDRRLRGLTVVDESGKSRG
CCEEEEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCC
AVKDVLHMPAQDVLVIDVSGEEHLVPFVHQLVPTVDVASGRIVVSGIPGLLDSNAEEAR
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEECCCCEEEEECCCCCCCCCHHCCC
>Mature Secondary Structure
MEESATVEVVVGRVGRAHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWA
CCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHC
KGCLIVAFDEVKDRQGAEELRGSVLVVDVEPNDDPDDPDEFWDRRLRGLTVVDESGKSRG
CCEEEEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCC
AVKDVLHMPAQDVLVIDVSGEEHLVPFVHQLVPTVDVASGRIVVSGIPGLLDSNAEEAR
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEECCCCEEEEECCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA