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The map label for this gene is rhmR [H]

Identifier: 50842848

GI number: 50842848

Start: 1486763

End: 1487482

Strand: Direct

Name: rhmR [H]

Synonym: PPA1364

Alternate gene names: 50842848

Gene position: 1486763-1487482 (Clockwise)

Preceding gene: 50842842

Following gene: 50842851

Centisome position: 58.07

GC content: 64.03

Gene sequence:

>720_bases
ATGGACGAATCAAGTGGTGTTGGTGTATTGGACAAGGCCGCCCTCGTATTGGCAGCCCTCGAGACCGGACCGGCCTCCTT
AGCAGGGCTGGTTCAAATGACCGGATTGGCTCGCCCGACAGCCCATCGCTTGGCGCGCGCTCTGGAACACCACCGTTTCG
TCGGACGCGATCTACAGGGGCGTTTCATTCTTGGCCCGCGGCTATCAGAACTTGCCGCAGCCGCCGGCGAAGATCGTCTC
TTGGCGGCTTCCGGGCCGATCCTGGCCAGGCTGCGTGACATCACAGGTGAGTCCGCTCAGTTGTACCGACGCCAGGCCGG
CAGCCGTGTCTGTGCCGCAGCTGCTGAACGTCCCACCGGTCTTCGCGACACCATTCCGGTCGGGTCGGTGTTGTCGATGG
ACGCCGGTTCAGCCGCTCAGATCCTGCTGGCATGGGAAGACGTCGACAAGATCCGCCGTGGCTTAAGCCACTCTGCCTTC
TCCGAAGTCACCTTGGCAGCCGTGCGCAAGCGCGGCTGGGCTCAATCTGTCGGTGAGCGTGAGGCCGGTGTGGCATCGGT
CTCGGCCCCAGTGCGCTCTCCCTCAGGAAAGGTCATTGCGGCTATATCGGTGTCAGGACCGATCGAGCGTCTCACCCGTC
AGCCGGGACGTATTCACGCTCCTGCCGTCGTCGCGGCGGGAGAGCGCTTATCGGAGGTGCTGCGCCGGTCCGCGCAATGA

Upstream 100 bases:

>100_bases
CCCCACCGCACCTTCCCATCCGTTGTTTGCAGTGTGATCCCCCTCTTGACAACACCCATTTTGGTTCGACGGTCAAGATT
TGGAACGCTAGTATCGGCAT

Downstream 100 bases:

>100_bases
GGGTCACAGTGCTGCCCAAAGCGACCAGGGGTGTGAGAGGGTAATTCTTCGCACCTTGGGGGATGGCATCTCGCCAAGAT
GCTGCCATGGCCCGGATCCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MDESSGVGVLDKAALVLAALETGPASLAGLVQMTGLARPTAHRLARALEHHRFVGRDLQGRFILGPRLSELAAAAGEDRL
LAASGPILARLRDITGESAQLYRRQAGSRVCAAAAERPTGLRDTIPVGSVLSMDAGSAAQILLAWEDVDKIRRGLSHSAF
SEVTLAAVRKRGWAQSVGEREAGVASVSAPVRSPSGKVIAAISVSGPIERLTRQPGRIHAPAVVAAGERLSEVLRRSAQ

Sequences:

>Translated_239_residues
MDESSGVGVLDKAALVLAALETGPASLAGLVQMTGLARPTAHRLARALEHHRFVGRDLQGRFILGPRLSELAAAAGEDRL
LAASGPILARLRDITGESAQLYRRQAGSRVCAAAAERPTGLRDTIPVGSVLSMDAGSAAQILLAWEDVDKIRRGLSHSAF
SEVTLAAVRKRGWAQSVGEREAGVASVSAPVRSPSGKVIAAISVSGPIERLTRQPGRIHAPAVVAAGERLSEVLRRSAQ
>Mature_239_residues
MDESSGVGVLDKAALVLAALETGPASLAGLVQMTGLARPTAHRLARALEHHRFVGRDLQGRFILGPRLSELAAAAGEDRL
LAASGPILARLRDITGESAQLYRRQAGSRVCAAAAERPTGLRDTIPVGSVLSMDAGSAAQILLAWEDVDKIRRGLSHSAF
SEVTLAAVRKRGWAQSVGEREAGVASVSAPVRSPSGKVIAAISVSGPIERLTRQPGRIHAPAVVAAGERLSEVLRRSAQ

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788581, Length=249, Percent_Identity=29.3172690763052, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786715, Length=224, Percent_Identity=27.6785714285714, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082359, Length=210, Percent_Identity=30, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 24965; Mature: 24965

Theoretical pI: Translated: 11.38; Mature: 11.38

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDESSGVGVLDKAALVLAALETGPASLAGLVQMTGLARPTAHRLARALEHHRFVGRDLQG
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
RFILGPRLSELAAAAGEDRLLAASGPILARLRDITGESAQLYRRQAGSRVCAAAAERPTG
CEEECCCHHHHHHHCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCC
LRDTIPVGSVLSMDAGSAAQILLAWEDVDKIRRGLSHSAFSEVTLAAVRKRGWAQSVGER
CCCCCCCCCEEECCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHH
EAGVASVSAPVRSPSGKVIAAISVSGPIERLTRQPGRIHAPAVVAAGERLSEVLRRSAQ
HCCCHHCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDESSGVGVLDKAALVLAALETGPASLAGLVQMTGLARPTAHRLARALEHHRFVGRDLQG
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
RFILGPRLSELAAAAGEDRLLAASGPILARLRDITGESAQLYRRQAGSRVCAAAAERPTG
CEEECCCHHHHHHHCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCC
LRDTIPVGSVLSMDAGSAAQILLAWEDVDKIRRGLSHSAFSEVTLAAVRKRGWAQSVGER
CCCCCCCCCEEECCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHH
EAGVASVSAPVRSPSGKVIAAISVSGPIERLTRQPGRIHAPAVVAAGERLSEVLRRSAQ
HCCCHHCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]