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The map label for this gene is yrdC [C]

Identifier: 50842729

GI number: 50842729

Start: 1354227

End: 1355150

Strand: Reverse

Name: yrdC [C]

Synonym: PPA1249

Alternate gene names: 50842729

Gene position: 1355150-1354227 (Counterclockwise)

Preceding gene: 50842730

Following gene: 50842728

Centisome position: 52.93

GC content: 58.77

Gene sequence:

>924_bases
ATGATCTGGCAGGTAGGCCGAGGTTCGTCACGGCTCGCCGACGGTGCAAGGATGGATGCCATGGATGAGACTGACCAGAC
GATGGTCAATACCGACGAGCTGGCCGGGCCGGTCGCAGAAGAGAAGTCGACAGTCAGCGGTATCGAGCCAAGAGGAGACG
CAGCGGCTGAAGGTTCCGGGATTTCCCCGTTCATCCTTGACGTTGCTAATCCTGATTCCTGTGAAGACGCCCTAGAACAG
GCTGCGGACGCTATTGCCGATGGTGAGTGCATCGTGCTACCGACCGACACCGTATACGGTATTGGTGCTGACGCCCTCAA
CGCTTTAGCAGTACAGCGTCTGCTCAACGCTAAGGAGCGGGGCCGCGATATGCCGCCGCCAGTTCTCGTCAGCGATTCGG
TCGCGTTGCCAGCCCTATGCCAGCACATACCGGCGGGGGCAAAGGCTCTTGCCGAGAAGTACTGGCCTGGGGGTCTCACT
CTTGTTTTGCGTGCTCAGGAGTCTCTTGGCATGGATTTGGGTGAGACTAACGGCACTCTTGCTGTTCGCGTGCCTGACCA
GGACCAGACTCGCGAGTTGCTGCGCATGACTGGGCCGCTTGCCGTCTCTAGTGCGAATAAGTCTGGCCATCCAGCGGCCT
TGACTGCGCAGGAAGCTGCCGATCAGTTGGGCGTTGAGGTGGCTGTCTACCTTGATGCCGGTCCAAGTCGGGTGGGGGAG
TCTTCGACGATTATTGATTTTGTTTCGACGACGGACGGAAAAGTGGTGCGTCAGGGCGCCCTATCACTGGAGGCTATCCA
CGAGGTTGCCCCTGACGTTATTGGGATGGAACCGCCGGCTATCGACCAAGATTCGTCCGAAAATCATGGTTCTGATGTTG
CCCCGACCGAGGCCACATCGACGCAGTCAGAGATCGAGGGCTGA

Upstream 100 bases:

>100_bases
CCGGGCGGCCTGTTCGTCATGGAACACGACGAGACCCAACGTGAGGAGCTCGTCGCTGCGATGGCGACTTCCGATATGTG
GGAGCAGATCGAGGACCATG

Downstream 100 bases:

>100_bases
CACTCGTCATGCGTGAATACCTCTTGGTGATGCTGACATCGGGTTTGACAACTTATCTGCTGTCTGGCTTGTGTCGGCAG
GCTGCCCTCAGGTGGGGAGC

Product: SUA5 related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIWQVGRGSSRLADGARMDAMDETDQTMVNTDELAGPVAEEKSTVSGIEPRGDAAAEGSGISPFILDVANPDSCEDALEQ
AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLT
LVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLRMTGPLAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAGPSRVGE
SSTIIDFVSTTDGKVVRQGALSLEAIHEVAPDVIGMEPPAIDQDSSENHGSDVAPTEATSTQSEIEG

Sequences:

>Translated_307_residues
MIWQVGRGSSRLADGARMDAMDETDQTMVNTDELAGPVAEEKSTVSGIEPRGDAAAEGSGISPFILDVANPDSCEDALEQ
AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLT
LVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLRMTGPLAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAGPSRVGE
SSTIIDFVSTTDGKVVRQGALSLEAIHEVAPDVIGMEPPAIDQDSSENHGSDVAPTEATSTQSEIEG
>Mature_307_residues
MIWQVGRGSSRLADGARMDAMDETDQTMVNTDELAGPVAEEKSTVSGIEPRGDAAAEGSGISPFILDVANPDSCEDALEQ
AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLT
LVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLRMTGPLAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAGPSRVGE
SSTIIDFVSTTDGKVVRQGALSLEAIHEVAPDVIGMEPPAIDQDSSENHGSDVAPTEATSTQSEIEG

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=217, Percent_Identity=31.3364055299539, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI78707274, Length=196, Percent_Identity=32.6530612244898, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 31806; Mature: 31806

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWQVGRGSSRLADGARMDAMDETDQTMVNTDELAGPVAEEKSTVSGIEPRGDAAAEGSG
CEEECCCCCCHHCCCCCCCCCCCCCHHHHCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC
ISPFILDVANPDSCEDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKER
CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHH
GRDMPPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTL
CCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCEE
AVRVPDQDQTRELLRMTGPLAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAGPSRVGE
EEEECCCHHHHHHHHHCCCEEEECCCCCCCCCEEEHHHHHHHCCCEEEEEEECCCCCCCC
SSTIIDFVSTTDGKVVRQGALSLEAIHEVAPDVIGMEPPAIDQDSSENHGSDVAPTEATS
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TQSEIEG
CHHHCCC
>Mature Secondary Structure
MIWQVGRGSSRLADGARMDAMDETDQTMVNTDELAGPVAEEKSTVSGIEPRGDAAAEGSG
CEEECCCCCCHHCCCCCCCCCCCCCHHHHCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC
ISPFILDVANPDSCEDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKER
CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHH
GRDMPPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTL
CCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCEE
AVRVPDQDQTRELLRMTGPLAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAGPSRVGE
EEEECCCHHHHHHHHHCCCEEEECCCCCCCCCEEEHHHHHHHCCCEEEEEEECCCCCCCC
SSTIIDFVSTTDGKVVRQGALSLEAIHEVAPDVIGMEPPAIDQDSSENHGSDVAPTEATS
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TQSEIEG
CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]