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The map label for this gene is atpH

Identifier: 50842722

GI number: 50842722

Start: 1349733

End: 1350524

Strand: Reverse

Name: atpH

Synonym: PPA1242

Alternate gene names: 50842722

Gene position: 1350524-1349733 (Counterclockwise)

Preceding gene: 50842723

Following gene: 50842721

Centisome position: 52.75

GC content: 61.74

Gene sequence:

>792_bases
ATGACGACGGCGGTGGGCGCATCACAGCAGCTAGACGAGGTCGGCGACCGACGTGGTACAGGTACCGAGTTCGCTAATGA
GATTTTCGCGGTCGTTGACGTCCTGAATCGTGAATCTGGCTTACGACGGGCAGTATCCGACACAGGTTCTGAGACCAAGG
CTCGTCAAGGGCTTATCGACGCGGTTTTCACGTCGAAGGTCTCGCCCGATTGCAAGGAACTCCTGGACGCGACAACCACC
TGTAAGTGGCGATCTCCGGCGGCGCTGACTCGCGCTCTGGAGCGGCAAGGGGTTCGTGCTGTGCTGCGTGGAGCCCGGCA
AGCTGACCGCTTCGAGGCAGTTGCCGACGAGTTGTTCCACGTGAGCCGACTCGTGCGCGGGCAGGCTGCGCTGCAGGTGG
CACTGGGTGATCCCAACCGTTCGGTGGCGGATCGCCAGGAGTTGCTCATGAAGTTGGTGGGAGGCCAAGTGAGCGAGGAA
ACCCTCGTATTGGCTCGCCGAGCTGTGGTGGCTTCCGACAGCACCTTCGAGCAGGTGATCGACGGGTACTTGCATGTTGC
CGCCGAGATGGCTGATCGCAGGCGTGCGATCGTGACGACCGCCAAGGCACTGACCGACGCCCAGCGCGCGGAAATGGTGA
AGCAACTAGAACGGATCACCGGCAGCCCGATCGAGTTGTCTGAAGTTGTTGACCCGACGGTGCTCGGGGGTGCGCTCATC
AACCTCGGTGACGAGGTCATTGATTCGACGGTGGCCCACCGTTTGGACCAAGCCCGACGAGAACTGGGCTGA

Upstream 100 bases:

>100_bases
CCCTACAAGACGACCAGCGCGTCCAGGCGACCGTCGACCGCTTCCTCTCATCGCTCGCCGACGAGCCCTCGGCGTCTAAT
TCGCGGACGGTGAATCGGGC

Downstream 100 bases:

>100_bases
CATACGTGACCCTCACCTCGGGTGCGGGATGGGGGAGCTTACAAGGAGACGCAATGGCGGAACTGACGATACGTCCGGAG
GAGATCCGCGACGCCCTGGA

Product: ATP synthase delta chain

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTTAVGASQQLDEVGDRRGTGTEFANEIFAVVDVLNRESGLRRAVSDTGSETKARQGLIDAVFTSKVSPDCKELLDATTT
CKWRSPAALTRALERQGVRAVLRGARQADRFEAVADELFHVSRLVRGQAALQVALGDPNRSVADRQELLMKLVGGQVSEE
TLVLARRAVVASDSTFEQVIDGYLHVAAEMADRRRAIVTTAKALTDAQRAEMVKQLERITGSPIELSEVVDPTVLGGALI
NLGDEVIDSTVAHRLDQARRELG

Sequences:

>Translated_263_residues
MTTAVGASQQLDEVGDRRGTGTEFANEIFAVVDVLNRESGLRRAVSDTGSETKARQGLIDAVFTSKVSPDCKELLDATTT
CKWRSPAALTRALERQGVRAVLRGARQADRFEAVADELFHVSRLVRGQAALQVALGDPNRSVADRQELLMKLVGGQVSEE
TLVLARRAVVASDSTFEQVIDGYLHVAAEMADRRRAIVTTAKALTDAQRAEMVKQLERITGSPIELSEVVDPTVLGGALI
NLGDEVIDSTVAHRLDQARRELG
>Mature_262_residues
TTAVGASQQLDEVGDRRGTGTEFANEIFAVVDVLNRESGLRRAVSDTGSETKARQGLIDAVFTSKVSPDCKELLDATTTC
KWRSPAALTRALERQGVRAVLRGARQADRFEAVADELFHVSRLVRGQAALQVALGDPNRSVADRQELLMKLVGGQVSEET
LVLARRAVVASDSTFEQVIDGYLHVAAEMADRRRAIVTTAKALTDAQRAEMVKQLERITGSPIELSEVVDPTVLGGALIN
LGDEVIDSTVAHRLDQARRELG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_PROAC (Q6A8C4)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055949.1
- ProteinModelPortal:   Q6A8C4
- GeneID:   2932415
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1242
- NMPDR:   fig|267747.1.peg.1226
- OMA:   AVEDELF
- ProtClustDB:   CLSK2763840
- BioCyc:   PACN267747:PPA1242-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 28448; Mature: 28316

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAVGASQQLDEVGDRRGTGTEFANEIFAVVDVLNRESGLRRAVSDTGSETKARQGLID
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AVFTSKVSPDCKELLDATTTCKWRSPAALTRALERQGVRAVLRGARQADRFEAVADELFH
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRLVRGQAALQVALGDPNRSVADRQELLMKLVGGQVSEETLVLARRAVVASDSTFEQVI
HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH
DGYLHVAAEMADRRRAIVTTAKALTDAQRAEMVKQLERITGSPIELSEVVDPTVLGGALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
NLGDEVIDSTVAHRLDQARRELG
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTAVGASQQLDEVGDRRGTGTEFANEIFAVVDVLNRESGLRRAVSDTGSETKARQGLID
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AVFTSKVSPDCKELLDATTTCKWRSPAALTRALERQGVRAVLRGARQADRFEAVADELFH
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRLVRGQAALQVALGDPNRSVADRQELLMKLVGGQVSEETLVLARRAVVASDSTFEQVI
HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH
DGYLHVAAEMADRRRAIVTTAKALTDAQRAEMVKQLERITGSPIELSEVVDPTVLGGALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
NLGDEVIDSTVAHRLDQARRELG
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA