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The map label for this gene is atpF

Identifier: 50842723

GI number: 50842723

Start: 1350521

End: 1351075

Strand: Reverse

Name: atpF

Synonym: PPA1243

Alternate gene names: 50842723

Gene position: 1351075-1350521 (Counterclockwise)

Preceding gene: 50842724

Following gene: 50842722

Centisome position: 52.77

GC content: 61.62

Gene sequence:

>555_bases
ATGAACATCCTCGAGATGGATCTTGGGCCGCTTGCTCCTGAGCATCCCATCGAGATTATCGTCGGAGTCATCCTTGTGTT
GCTCCTCACGTGGCTCATCGCCAAGGCGGTTGTTCCCCGTTTCGAGAAGCTTTACGAGGAGCGCACCGAGACGATTCAAG
GTGGAATTGAGAGGGCTGAGAGGGCTCAGGCTGAGGCTAAAGCGGCTCTTGAGAAGTACCAGGCTCAGCTGGCCAGCGCG
CGCGATGAGGCTGCCCAGATACGTGATGACGCGAAGAGTCAGGGAGCACAGATTATTGCGGAGATGCGTGCCAACGCCCA
GGAAGAGGCCGATCGGATCACCGAGCGTGCCAACGCTCAAATCCAGGCCGAGCGCGATCAGGCGGTGCGCGAGGTGCGTG
CCGAGATCGGCGGCCTTGCGACCACCCTGGCCAGTCGGATCGTGGGGGAGTCCCTACAAGACGACCAGCGCGTCCAGGCG
ACCGTCGACCGCTTCCTCTCATCGCTCGCCGACGAGCCCTCGGCGTCTAATTCGCGGACGGTGAATCGGGCATGA

Upstream 100 bases:

>100_bases
CCGGCCATGATGACGACGGCATTCATTGGCTTCGCTGTGGTCGAGGCTCTCGCGCTGTTCGGTTTTATCCTCGCCTTCAT
CGTTAAGTGAGCCCGGACGT

Downstream 100 bases:

>100_bases
CGACGGCGGTGGGCGCATCACAGCAGCTAGACGAGGTCGGCGACCGACGTGGTACAGGTACCGAGTTCGCTAATGAGATT
TTCGCGGTCGTTGACGTCCT

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNILEMDLGPLAPEHPIEIIVGVILVLLLTWLIAKAVVPRFEKLYEERTETIQGGIERAERAQAEAKAALEKYQAQLASA
RDEAAQIRDDAKSQGAQIIAEMRANAQEEADRITERANAQIQAERDQAVREVRAEIGGLATTLASRIVGESLQDDQRVQA
TVDRFLSSLADEPSASNSRTVNRA

Sequences:

>Translated_184_residues
MNILEMDLGPLAPEHPIEIIVGVILVLLLTWLIAKAVVPRFEKLYEERTETIQGGIERAERAQAEAKAALEKYQAQLASA
RDEAAQIRDDAKSQGAQIIAEMRANAQEEADRITERANAQIQAERDQAVREVRAEIGGLATTLASRIVGESLQDDQRVQA
TVDRFLSSLADEPSASNSRTVNRA
>Mature_184_residues
MNILEMDLGPLAPEHPIEIIVGVILVLLLTWLIAKAVVPRFEKLYEERTETIQGGIERAERAQAEAKAALEKYQAQLASA
RDEAAQIRDDAKSQGAQIIAEMRANAQEEADRITERANAQIQAERDQAVREVRAEIGGLATTLASRIVGESLQDDQRVQA
TVDRFLSSLADEPSASNSRTVNRA

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_PROAC (Q6A8C3)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055950.1
- ProteinModelPortal:   Q6A8C3
- SMR:   Q6A8C3
- GeneID:   2932428
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1243
- NMPDR:   fig|267747.1.peg.1227
- HOGENOM:   HBG617328
- OMA:   LEEYKQQ
- ProtClustDB:   PRK05759
- BioCyc:   PACN267747:PPA1243-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 20215; Mature: 20215

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12ccdc34)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILEMDLGPLAPEHPIEIIVGVILVLLLTWLIAKAVVPRFEKLYEERTETIQGGIERAE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAQAEAKAALEKYQAQLASARDEAAQIRDDAKSQGAQIIAEMRANAQEEADRITERANAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCH
IQAERDQAVREVRAEIGGLATTLASRIVGESLQDDQRVQATVDRFLSSLADEPSASNSRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC
VNRA
CCCH
>Mature Secondary Structure
MNILEMDLGPLAPEHPIEIIVGVILVLLLTWLIAKAVVPRFEKLYEERTETIQGGIERAE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAQAEAKAALEKYQAQLASARDEAAQIRDDAKSQGAQIIAEMRANAQEEADRITERANAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCH
IQAERDQAVREVRAEIGGLATTLASRIVGESLQDDQRVQATVDRFLSSLADEPSASNSRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC
VNRA
CCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA