Click here to switch to the map view.

The map label for this gene is prcB [H]

Identifier: 50842686

GI number: 50842686

Start: 1314310

End: 1315146

Strand: Direct

Name: prcB [H]

Synonym: PPA1206

Alternate gene names: 50842686

Gene position: 1314310-1315146 (Clockwise)

Preceding gene: 50842681

Following gene: 50842687

Centisome position: 51.33

GC content: 60.1

Gene sequence:

>837_bases
ATGCCATTGTCGTTATCCGATCTCGATGGGGATTACCTCATGTCGAGTACGACCACCGATTCCTTCGCCGTGCTTCTACG
GCGAGTCGCTCCTGAACTCTTACCCCCGACGACCGTCGACACCAGCGTTCCCGAACTGTTGAGGCACGGCAGAACTGTAC
TGGCGATTCGCTACAACGGGGGAGTCGTCGTTGCCGCTGATCTGGGCTCCGCATTGGCAAGACGCCTCGGTCAGACCGAC
GTCGACCGTATTCTCGGCACCGACGACCGGTGCGTTATTGGCGTCGCCGGGGCAGCCGGCCTGGCAGGGGAGATGATTCG
CCTGTTCCAAGCTGAGGTCGACCACCTCGAGAAGATTCAAGGACAGCGGATCAGCATGGATGGCTGCGCCGTCAGGCTGT
CAAGTCTGGTGCGTTCTCATGGAACGATGATGGCTCAGGGGCTCGCCGTCACACCATTACTGGCAGGCTGGGATGAGTTG
GCCCATCGCGGCCGGATCTTTTCCTACGACGGTACTGGCGGGCAAACTGAAGAACATTCCCATGCCTGTGTGGGGTCGGG
AGCTCTGTTTGCAAGCGACGTTCTCAACGAAGACTACCGAACAGGGATGGATCGGGATGAATCCGTGGCGCTGGCTATCC
GCGCCCTTGACACAGCTATCAGCGATGACAGCCCGTCGTCTCTGTCGGGACCTGATCTGTCGCGCGGCCTGTACCCGACA
GTGGCATGTGTAGATTCCCATGGCGTGACCCGAATGCCCACCGAGGAGGTGGCGGTACTGACGAAACGGCTAGTCGACCA
GGTCACCGCCGAATCTGATCGTGAGGAGGCCCAATGA

Upstream 100 bases:

>100_bases
TACCACCGGTATCGGATACCAATGGTATCCGTCTCTAGGGTCCAGCCCAAATCGGTCGGCTAGGGTAGAAAACCCAAGTG
TCGTCGTGACGAGGAGGGTC

Downstream 100 bases:

>100_bases
TGACGGTTCCAGCCTATGTTCCACCGAGTGAGTGGGTAACTGATCGTTCCACGTTTGTCTCAGATTCCATTCGCAATGGC
GGCGACGGTATCGTCGTCGC

Product: 20S proteasome beta-subunit precursor

Products: NA

Alternate protein names: 20S proteasome beta subunit; Proteasome core protein PrcB [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPLSLSDLDGDYLMSSTTTDSFAVLLRRVAPELLPPTTVDTSVPELLRHGRTVLAIRYNGGVVVAADLGSALARRLGQTD
VDRILGTDDRCVIGVAGAAGLAGEMIRLFQAEVDHLEKIQGQRISMDGCAVRLSSLVRSHGTMMAQGLAVTPLLAGWDEL
AHRGRIFSYDGTGGQTEEHSHACVGSGALFASDVLNEDYRTGMDRDESVALAIRALDTAISDDSPSSLSGPDLSRGLYPT
VACVDSHGVTRMPTEEVAVLTKRLVDQVTAESDREEAQ

Sequences:

>Translated_278_residues
MPLSLSDLDGDYLMSSTTTDSFAVLLRRVAPELLPPTTVDTSVPELLRHGRTVLAIRYNGGVVVAADLGSALARRLGQTD
VDRILGTDDRCVIGVAGAAGLAGEMIRLFQAEVDHLEKIQGQRISMDGCAVRLSSLVRSHGTMMAQGLAVTPLLAGWDEL
AHRGRIFSYDGTGGQTEEHSHACVGSGALFASDVLNEDYRTGMDRDESVALAIRALDTAISDDSPSSLSGPDLSRGLYPT
VACVDSHGVTRMPTEEVAVLTKRLVDQVTAESDREEAQ
>Mature_277_residues
PLSLSDLDGDYLMSSTTTDSFAVLLRRVAPELLPPTTVDTSVPELLRHGRTVLAIRYNGGVVVAADLGSALARRLGQTDV
DRILGTDDRCVIGVAGAAGLAGEMIRLFQAEVDHLEKIQGQRISMDGCAVRLSSLVRSHGTMMAQGLAVTPLLAGWDELA
HRGRIFSYDGTGGQTEEHSHACVGSGALFASDVLNEDYRTGMDRDESVALAIRALDTAISDDSPSSLSGPDLSRGLYPTV
ACVDSHGVTRMPTEEVAVLTKRLVDQVTAESDREEAQ

Specific function: Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation [H]

COG id: COG0638

COG function: function code O; 20S proteasome, alpha and beta subunits

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase T1B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022483
- InterPro:   IPR000243
- InterPro:   IPR001353 [H]

Pfam domain/function: PF00227 Proteasome [H]

EC number: =3.4.25.1 [H]

Molecular weight: Translated: 29579; Mature: 29447

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSLSDLDGDYLMSSTTTDSFAVLLRRVAPELLPPTTVDTSVPELLRHGRTVLAIRYNG
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECC
GVVVAADLGSALARRLGQTDVDRILGTDDRCVIGVAGAAGLAGEMIRLFQAEVDHLEKIQ
CEEEEEHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
GQRISMDGCAVRLSSLVRSHGTMMAQGLAVTPLLAGWDELAHRGRIFSYDGTGGQTEEHS
CCEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCC
HACVGSGALFASDVLNEDYRTGMDRDESVALAIRALDTAISDDSPSSLSGPDLSRGLYPT
CHHHCCCHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
VACVDSHGVTRMPTEEVAVLTKRLVDQVTAESDREEAQ
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
PLSLSDLDGDYLMSSTTTDSFAVLLRRVAPELLPPTTVDTSVPELLRHGRTVLAIRYNG
CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECC
GVVVAADLGSALARRLGQTDVDRILGTDDRCVIGVAGAAGLAGEMIRLFQAEVDHLEKIQ
CEEEEEHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
GQRISMDGCAVRLSSLVRSHGTMMAQGLAVTPLLAGWDELAHRGRIFSYDGTGGQTEEHS
CCEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHCCCEEEECCCCCCCCCCC
HACVGSGALFASDVLNEDYRTGMDRDESVALAIRALDTAISDDSPSSLSGPDLSRGLYPT
CHHHCCCHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
VACVDSHGVTRMPTEEVAVLTKRLVDQVTAESDREEAQ
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA