Click here to switch to the map view.

The map label for this gene is 50842474

Identifier: 50842474

GI number: 50842474

Start: 1075289

End: 1076197

Strand: Direct

Name: 50842474

Synonym: PPA0990

Alternate gene names: NA

Gene position: 1075289-1076197 (Clockwise)

Preceding gene: 50842473

Following gene: 50842475

Centisome position: 42.0

GC content: 55.12

Gene sequence:

>909_bases
ATGAGGTTGAGTCGTCGTCACGTGCTCGCTAGTACTGTTGGGGTAGTTTCGACGGCGTTGATCACGGCACAGACGCCCGC
AGGTATCGCGTTTGCAAGGCCTCGTAGGGCTTCTAGGGCAGTGACCACTGCGGTCTACATCGAGGTCAATCACGAGGATC
TCGCGACTGTCGGGGCCTTCGTCCGAGAAGGGGTTCACCGCCCGGTCTTCGATCTGGCTATGATTTTTGCGGCGAATATC
AACTATGACGGGTGCACGGCTTACCTGCACCTGAACGAGCGAGTTATGGAAACGCTCAGAGCTGCTGAAACTCAGATTCG
TCCGTTGCAGCGTCGTGGGACGAAGGTACTCTTGTCGCTCCTTGGCAATCATGAGGGCGCCGGATTCGCCAACTTTCCAA
CCCGGCATGACGCTGACCGGTTCGCGGCTCAGGTAGCAAGTGTTGTTCATAGGTATCACCTTGATGGCGTCGACCTAGAT
GATGAATATTCCGAATATGGCAAAAATGGTACCGGTCAGCCCAATGAAGACTTTTTTGTTTGGTTTGTTCGTGCGCTGCG
ACGCCACCTAGGGCCTCATAAACTCCTCACCTTGTACTCGATTGGGCCATCGGTTAATCGAACTGTTTCGTCCGCGGGCA
ATGCATCAGATGACCTCGATTATGCGTGGAACCCGTGGTATGGCACCTATCAGGAACCATCGGTGCTGGGTATGCCTCGA
AGTCATGTGGGGGCGGCGGCAGTTGACTGGGGACATACGTCGATCGAAATGATCCAGACGATGGCTTCTCAAACTATCCA
TGACGGTTATGGCGTCTTCATGACGTACGACTTGCGGGTGTCGACGAACCCGTCCCTCGTGCAGGCCATGACAACAGCCT
TGGAAGGAAGGCGGCGACTTCGACAGTGA

Upstream 100 bases:

>100_bases
TCCGCCATACTCCTGCTAGCCTTTTTAGCGTCTAAACTAAACCGAATTAGCTCTCGTGGTAACGGCGCTGCGAGGGGTGG
AGATCAAAGGAGCAGGACAC

Downstream 100 bases:

>100_bases
CCGTCGAAGAAAAGGCCCCACGGTGGTCGTCGGCGGGATGTTCTGGCACACTGATGAAGGTGAGAACTTCCTGTCACGCA
GAGCAAGGGAAAGCGAAGGA

Product: endo-beta-N-acetylglucosaminidase H

Products: NA

Alternate protein names: DI-N-acetylchitobiosyl beta-N-acetylglucosaminidase H; Endoglycosidase H; Endo H; Mannosyl-glycoprotein endo-beta-N-acetyl-glucosaminidase H [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRLSRRHVLASTVGVVSTALITAQTPAGIAFARPRRASRAVTTAVYIEVNHEDLATVGAFVREGVHRPVFDLAMIFAANI
NYDGCTAYLHLNERVMETLRAAETQIRPLQRRGTKVLLSLLGNHEGAGFANFPTRHDADRFAAQVASVVHRYHLDGVDLD
DEYSEYGKNGTGQPNEDFFVWFVRALRRHLGPHKLLTLYSIGPSVNRTVSSAGNASDDLDYAWNPWYGTYQEPSVLGMPR
SHVGAAAVDWGHTSIEMIQTMASQTIHDGYGVFMTYDLRVSTNPSLVQAMTTALEGRRRLRQ

Sequences:

>Translated_302_residues
MRLSRRHVLASTVGVVSTALITAQTPAGIAFARPRRASRAVTTAVYIEVNHEDLATVGAFVREGVHRPVFDLAMIFAANI
NYDGCTAYLHLNERVMETLRAAETQIRPLQRRGTKVLLSLLGNHEGAGFANFPTRHDADRFAAQVASVVHRYHLDGVDLD
DEYSEYGKNGTGQPNEDFFVWFVRALRRHLGPHKLLTLYSIGPSVNRTVSSAGNASDDLDYAWNPWYGTYQEPSVLGMPR
SHVGAAAVDWGHTSIEMIQTMASQTIHDGYGVFMTYDLRVSTNPSLVQAMTTALEGRRRLRQ
>Mature_302_residues
MRLSRRHVLASTVGVVSTALITAQTPAGIAFARPRRASRAVTTAVYIEVNHEDLATVGAFVREGVHRPVFDLAMIFAANI
NYDGCTAYLHLNERVMETLRAAETQIRPLQRRGTKVLLSLLGNHEGAGFANFPTRHDADRFAAQVASVVHRYHLDGVDLD
DEYSEYGKNGTGQPNEDFFVWFVRALRRHLGPHKLLTLYSIGPSVNRTVSSAGNASDDLDYAWNPWYGTYQEPSVLGMPR
SHVGAAAVDWGHTSIEMIQTMASQTIHDGYGVFMTYDLRVSTNPSLVQAMTTALEGRRRLRQ

Specific function: Cleaves asparagine-linked oligomannose and hybrid, but not complex, oligosaccharides from glycoproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 18 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001223
- InterPro:   IPR001579
- InterPro:   IPR016289
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00704 Glyco_hydro_18 [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 33514; Mature: 33514

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSRRHVLASTVGVVSTALITAQTPAGIAFARPRRASRAVTTAVYIEVNHEDLATVGAF
CCCCHHHHHHHHHHHHHHHHHEECCCCCCEECCCCHHHHEEEEEEEEEECCHHHHHHHHH
VREGVHRPVFDLAMIFAANINYDGCTAYLHLNERVMETLRAAETQIRPLQRRGTKVLLSL
HHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGNHEGAGFANFPTRHDADRFAAQVASVVHRYHLDGVDLDDEYSEYGKNGTGQPNEDFFV
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHH
WFVRALRRHLGPHKLLTLYSIGPSVNRTVSSAGNASDDLDYAWNPWYGTYQEPSVLGMPR
HHHHHHHHHCCCHHEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
SHVGAAAVDWGHTSIEMIQTMASQTIHDGYGVFMTYDLRVSTNPSLVQAMTTALEGRRRL
HHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHH
RQ
CC
>Mature Secondary Structure
MRLSRRHVLASTVGVVSTALITAQTPAGIAFARPRRASRAVTTAVYIEVNHEDLATVGAF
CCCCHHHHHHHHHHHHHHHHHEECCCCCCEECCCCHHHHEEEEEEEEEECCHHHHHHHHH
VREGVHRPVFDLAMIFAANINYDGCTAYLHLNERVMETLRAAETQIRPLQRRGTKVLLSL
HHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGNHEGAGFANFPTRHDADRFAAQVASVVHRYHLDGVDLDDEYSEYGKNGTGQPNEDFFV
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHH
WFVRALRRHLGPHKLLTLYSIGPSVNRTVSSAGNASDDLDYAWNPWYGTYQEPSVLGMPR
HHHHHHHHHCCCHHEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
SHVGAAAVDWGHTSIEMIQTMASQTIHDGYGVFMTYDLRVSTNPSLVQAMTTALEGRRRL
HHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHH
RQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6429133; 7663942; 10595536 [H]