| Definition | Mesoplasma florum L1, complete genome. |
|---|---|
| Accession | NC_006055 |
| Length | 793,224 |
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The map label for this gene is uvrA [H]
Identifier: 50364874
GI number: 50364874
Start: 75510
End: 78359
Strand: Direct
Name: uvrA [H]
Synonym: Mfl059
Alternate gene names: 50364874
Gene position: 75510-78359 (Clockwise)
Preceding gene: 50364873
Following gene: 50364875
Centisome position: 9.52
GC content: 29.47
Gene sequence:
>2850_bases ATGGAAAATAAAATAGTAATAAAAGGTGCAAGAGAAAACAATTTAAAAAACGTTGACTTAGAAATACCAAAAAATAAGCT AGTTGTTTTTACTGGATTAAGTGGTAGTGGTAAATCATCATTAGCTTTTGCAACAATTTATGCTGAAGGTAGAAGAAGAT ATATTGAATCTCTTTCAGCATATGCAAGACAATTCTTAGGTGGAAATGAAAAACCTGATGTTGATTCAATCGAAGGTTTA AGCCCCGCAATTTCAATTGACCAAAAGACTACATCTCATAACCCGAGATCAACTGTTGGAACTGTGACTGAAATTTATGA TTACTTAAGATTGCTTTATGCAAGAGTTGGGACACCATATTGTATTAACGGTCATGGGCAAATACATGCTGCAACAATTA AAGAAATTATTAATAATATTAAAAGTACAACTGAAGATAATGAACAGGTTTATGTTTTATCTCCAGTTGTTAGAGATAAA AAAGGAACACATAAGGACTTACTAGCTAAATTGTTAGGTGAAGGTTTTATTAGAGTATCTATAAATGGTGAAATCAAAAT GTTAGAAGAAGAAATCATTTTAGATAAAAATCAAAGACATAATATTGATATTGTTGTTGATCGTCTAATCTATCATAATG ATGATGAAGTTCATTCAAGACTTTTCTCTGCAATTGAAATCGCTTTACAATATTCAAATAGTTTAGTGAAAATAAAATAT CCTGAAACTGAAAATAAAGAAGATAATTTATTTTCAAACTCATACTCATGTAATGTTTGTGGATTTAACATACCAGAATT AGAACCAAGATTATTTTCATTTAATGCACCGTTAGGAGCATGTGGAGATTGTGATGGTTTAGGTGTAAGATTGGTTTCTG ACCCAGAGCTAATAATTCCAGATAAATCTTTATCAATTAATCAAGGAGGAGTTGTTTACTTTAAAAACTTTTTAAATACA GATAATTTAGAGTGACAAAAATTTAAAATTTTATGTGATTACTATTACATTGATATGAATTTGCCAATTGATCAACTTAC TAATAAACAAATTAAGGCAATTCTTAGAGGTAGTGAAGAACAAATTGAAATAAAACTATTAAGCAGTAGTGGAAGAAGAT ATGATTCATATGATTTTGTTGAAGGAGTTGCTGATTTAATTCAAAGAAGATATTTTGAAACAAAGTCTGAAGAAATTAGA AAATGATATACAAAATTTATGTCCTCAAGTGTTTGTCAGTCATGTGATGGAGCTAGATTAAACCCAACAGCATTATCAAT AAAAATTGCTGATAAAAATATTTTTGATTTTACAAAAATGAGCATACAAGATGAATTAGAATTTATCTTAAATGTTGAAT TAACTCAAACTCAAGCACAAATAGCAAACTTAGTTTTAACAGAAATTACAAATAGAATAAGTTTTTTAAATGAAGTTGGA TTAGGTTATTTAGATTTAGCGAGAACTGCAACGACTTTATCTGGTGGAGAAGCACAAAGAATTAGGTTAGCAAAACAAAT TGGTAGTCAACTGACAGGTATTTTATATGTACTTGATGAACCATCAATTGGATTACATCAAAGAGATAATGATAAACTGA TAAAAACATTGAAACATTTAAGAGATCTTGGAAATACTTTAATAGTTGTTGAACATGACGAAGATACAATGAAAACAGCT GATTGAATTGTTGATGTTGGACCTCAAGCTGGTGAGCACGGAGGACAAATTACATTTAGTGGTACTTATGATGAAATATT AAAGTCAGACACAATTACGGGTAGATATTTATCTGGTAAAGAATCTATTCCTGTTCCTAAAAAACGTAGAAGTGGTAACG GACAAAAAATTGATATTGTAGGTGCAAGAGAAAATAACCTAAAAAATGTTAATGTCTCTATTCCATTAAATAAATTTATT GCAATCACAGGAGTAAGTGGTAGTGGTAAGTCAACTTTATTAGAAGATATTATTTATAAAGGTATAAGAAAAAATCTAGC AAGAGAAACAATAGTAACTGGAAAATTTAGTAAAATGAATGGTCTAGAAAATATTGATAAAGTTATTTTTATTTCACAAG AACCAATTGGTAAAACACCAAGATCAAACCCCGCAACTTACACAGGTGTATTTGATGACATAAGAGATTTATTTACAAAT CTACCTGAAGCTAAAATTAGAGGATACAAAAAAGGGAGATTTTCATTTAACGTACCTGGTGGTAGATGTGAACATTGTTT TGGTGATGGTGTAATAACAATTTCAATGCAATTTATGCCAAGTGTTGAAGTGGTTTGTGAAATTTGTGAAGGAAAAAGAT ATAACGATGAAACTTTACAAGTTAAATTTAAAGAAAAAACAATAGCTGATGTTTTAAATATGACTGTTGAAACAGCTGCA GCCTTTTTTGAAAACATTCCAAGTATCAAAGATAAATTAGATACAATTCTTGAAGTTGGTTTAGGATATATAAGATTAGG TCAATCAGCTACAACCTTATCTGGTGGAGAAGCTCAAAGAATTAAGTTATCTACTTATTTACTAAAAAAACAAACAGGTA AAACAATGTTCTTATTAGATGAACCAACAACTGGTTTACATATTGATGATGTTAAAAGATTAGTTCATGTTTTAAATAAA TTAGTAGACTTAGGAAACACTGTAGTAGCAATCGAACATAATTTAGACTTTATTAAAGTCGCTGACCATGTTATCGATTT AGGACCAGAAGGTGGAATTGGCGGTGGATTAATTGTTGCTGCTGGAACACCAGAACAAGTTGCTGATACAAAAGGTTCAT ATACGGGAACTTATTTAAAGGAATATTTATATAATGATTTCAGTAGATAA
Upstream 100 bases:
>100_bases CTGAAATGATTCAAGCAGCAAAGGATTTAGATTTTGAAAAAGCAGCAGTTTTAAGAGATACAATAATTGAACTAGAAGCT AAGAAAAGTGAGGTAAAATA
Downstream 100 bases:
>100_bases GTTTTTAATACCTATTCAACAAAGATTTCAAAATGAATACAATTTAGATAAAGTTTTAAAACAATTAAATAATATTGAAA AGAAGATACCAACTATTAAT
Product: repair endonuclease subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 949; Mature: 949
Protein sequence:
>949_residues MENKIVIKGARENNLKNVDLEIPKNKLVVFTGLSGSGKSSLAFATIYAEGRRRYIESLSAYARQFLGGNEKPDVDSIEGL SPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARVGTPYCINGHGQIHAATIKEIINNIKSTTEDNEQVYVLSPVVRDK KGTHKDLLAKLLGEGFIRVSINGEIKMLEEEIILDKNQRHNIDIVVDRLIYHNDDEVHSRLFSAIEIALQYSNSLVKIKY PETENKEDNLFSNSYSCNVCGFNIPELEPRLFSFNAPLGACGDCDGLGVRLVSDPELIIPDKSLSINQGGVVYFKNFLNT DNLEWQKFKILCDYYYIDMNLPIDQLTNKQIKAILRGSEEQIEIKLLSSSGRRYDSYDFVEGVADLIQRRYFETKSEEIR KWYTKFMSSSVCQSCDGARLNPTALSIKIADKNIFDFTKMSIQDELEFILNVELTQTQAQIANLVLTEITNRISFLNEVG LGYLDLARTATTLSGGEAQRIRLAKQIGSQLTGILYVLDEPSIGLHQRDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKTA DWIVDVGPQAGEHGGQITFSGTYDEILKSDTITGRYLSGKESIPVPKKRRSGNGQKIDIVGARENNLKNVNVSIPLNKFI AITGVSGSGKSTLLEDIIYKGIRKNLARETIVTGKFSKMNGLENIDKVIFISQEPIGKTPRSNPATYTGVFDDIRDLFTN LPEAKIRGYKKGRFSFNVPGGRCEHCFGDGVITISMQFMPSVEVVCEICEGKRYNDETLQVKFKEKTIADVLNMTVETAA AFFENIPSIKDKLDTILEVGLGYIRLGQSATTLSGGEAQRIKLSTYLLKKQTGKTMFLLDEPTTGLHIDDVKRLVHVLNK LVDLGNTVVAIEHNLDFIKVADHVIDLGPEGGIGGGLIVAAGTPEQVADTKGSYTGTYLKEYLYNDFSR
Sequences:
>Translated_949_residues MENKIVIKGARENNLKNVDLEIPKNKLVVFTGLSGSGKSSLAFATIYAEGRRRYIESLSAYARQFLGGNEKPDVDSIEGL SPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARVGTPYCINGHGQIHAATIKEIINNIKSTTEDNEQVYVLSPVVRDK KGTHKDLLAKLLGEGFIRVSINGEIKMLEEEIILDKNQRHNIDIVVDRLIYHNDDEVHSRLFSAIEIALQYSNSLVKIKY PETENKEDNLFSNSYSCNVCGFNIPELEPRLFSFNAPLGACGDCDGLGVRLVSDPELIIPDKSLSINQGGVVYFKNFLNT DNLE*QKFKILCDYYYIDMNLPIDQLTNKQIKAILRGSEEQIEIKLLSSSGRRYDSYDFVEGVADLIQRRYFETKSEEIR K*YTKFMSSSVCQSCDGARLNPTALSIKIADKNIFDFTKMSIQDELEFILNVELTQTQAQIANLVLTEITNRISFLNEVG LGYLDLARTATTLSGGEAQRIRLAKQIGSQLTGILYVLDEPSIGLHQRDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKTA D*IVDVGPQAGEHGGQITFSGTYDEILKSDTITGRYLSGKESIPVPKKRRSGNGQKIDIVGARENNLKNVNVSIPLNKFI AITGVSGSGKSTLLEDIIYKGIRKNLARETIVTGKFSKMNGLENIDKVIFISQEPIGKTPRSNPATYTGVFDDIRDLFTN LPEAKIRGYKKGRFSFNVPGGRCEHCFGDGVITISMQFMPSVEVVCEICEGKRYNDETLQVKFKEKTIADVLNMTVETAA AFFENIPSIKDKLDTILEVGLGYIRLGQSATTLSGGEAQRIKLSTYLLKKQTGKTMFLLDEPTTGLHIDDVKRLVHVLNK LVDLGNTVVAIEHNLDFIKVADHVIDLGPEGGIGGGLIVAAGTPEQVADTKGSYTGTYLKEYLYNDFSR >Mature_949_residues MENKIVIKGARENNLKNVDLEIPKNKLVVFTGLSGSGKSSLAFATIYAEGRRRYIESLSAYARQFLGGNEKPDVDSIEGL SPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARVGTPYCINGHGQIHAATIKEIINNIKSTTEDNEQVYVLSPVVRDK KGTHKDLLAKLLGEGFIRVSINGEIKMLEEEIILDKNQRHNIDIVVDRLIYHNDDEVHSRLFSAIEIALQYSNSLVKIKY PETENKEDNLFSNSYSCNVCGFNIPELEPRLFSFNAPLGACGDCDGLGVRLVSDPELIIPDKSLSINQGGVVYFKNFLNT DNLE*QKFKILCDYYYIDMNLPIDQLTNKQIKAILRGSEEQIEIKLLSSSGRRYDSYDFVEGVADLIQRRYFETKSEEIR K*YTKFMSSSVCQSCDGARLNPTALSIKIADKNIFDFTKMSIQDELEFILNVELTQTQAQIANLVLTEITNRISFLNEVG LGYLDLARTATTLSGGEAQRIRLAKQIGSQLTGILYVLDEPSIGLHQRDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKTA D*IVDVGPQAGEHGGQITFSGTYDEILKSDTITGRYLSGKESIPVPKKRRSGNGQKIDIVGARENNLKNVNVSIPLNKFI AITGVSGSGKSTLLEDIIYKGIRKNLARETIVTGKFSKMNGLENIDKVIFISQEPIGKTPRSNPATYTGVFDDIRDLFTN LPEAKIRGYKKGRFSFNVPGGRCEHCFGDGVITISMQFMPSVEVVCEICEGKRYNDETLQVKFKEKTIADVLNMTVETAA AFFENIPSIKDKLDTILEVGLGYIRLGQSATTLSGGEAQRIKLSTYLLKKQTGKTMFLLDEPTTGLHIDDVKRLVHVLNK LVDLGNTVVAIEHNLDFIKVADHVIDLGPEGGIGGGLIVAAGTPEQVADTKGSYTGTYLKEYLYNDFSR
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=946, Percent_Identity=51.3742071881607, Blast_Score=939, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105134; Mature: 105134
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKIVIKGARENNLKNVDLEIPKNKLVVFTGLSGSGKSSLAFATIYAEGRRRYIESLSA CCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHH YARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARVGTPY HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE CINGHGQIHAATIKEIINNIKSTTEDNEQVYVLSPVVRDKKGTHKDLLAKLLGEGFIRVS EECCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCCCCHHHHHHHHHCCCEEEEE INGEIKMLEEEIILDKNQRHNIDIVVDRLIYHNDDEVHSRLFSAIEIALQYSNSLVKIKY ECCCEEEEEHHHHCCCCCCCCHHEEEEEHHHCCCHHHHHHHHHHHHHHHEECCCEEEEEC PETENKEDNLFSNSYSCNVCGFNIPELEPRLFSFNAPLGACGDCDGLGVRLVSDPELIIP CCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEC DKSLSINQGGVVYFKNFLNTDNLEQKFKILCDYYYIDMNLPIDQLTNKQIKAILRGSEEQ CCCCCCCCCCEEEEECCCCCCCHHHHHHEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCE IEIKLLSSSGRRYDSYDFVEGVADLIQRRYFETKSEEIRKYTKFMSSSVCQSCDGARLNP EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC TALSIKIADKNIFDFTKMSIQDELEFILNVELTQTQAQIANLVLTEITNRISFLNEVGLG EEEEEEEECCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC YLDLARTATTLSGGEAQRIRLAKQIGSQLTGILYVLDEPSIGLHQRDNDKLIKTLKHLRD HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH LGNTLIVVEHDEDTMKTADIVDVGPQAGEHGGQITFSGTYDEILKSDTITGRYLSGKESI CCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCCCEEECCCCCC PVPKKRRSGNGQKIDIVGARENNLKNVNVSIPLNKFIAITGVSGSGKSTLLEDIIYKGIR CCCHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH KNLARETIVTGKFSKMNGLENIDKVIFISQEPIGKTPRSNPATYTGVFDDIRDLFTNLPE HHHHHHHHCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHCCCH AKIRGYKKGRFSFNVPGGRCEHCFGDGVITISMQFMPSVEVVCEICEGKRYNDETLQVKF HHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEE KEKTIADVLNMTVETAAAFFENIPSIKDKLDTILEVGLGYIRLGQSATTLSGGEAQRIKL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEE STYLLKKQTGKTMFLLDEPTTGLHIDDVKRLVHVLNKLVDLGNTVVAIEHNLDFIKVADH HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHH VIDLGPEGGIGGGLIVAAGTPEQVADTKGSYTGTYLKEYLYNDFSR HHCCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MENKIVIKGARENNLKNVDLEIPKNKLVVFTGLSGSGKSSLAFATIYAEGRRRYIESLSA CCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHH YARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARVGTPY HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE CINGHGQIHAATIKEIINNIKSTTEDNEQVYVLSPVVRDKKGTHKDLLAKLLGEGFIRVS EECCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCCCCHHHHHHHHHCCCEEEEE INGEIKMLEEEIILDKNQRHNIDIVVDRLIYHNDDEVHSRLFSAIEIALQYSNSLVKIKY ECCCEEEEEHHHHCCCCCCCCHHEEEEEHHHCCCHHHHHHHHHHHHHHHEECCCEEEEEC PETENKEDNLFSNSYSCNVCGFNIPELEPRLFSFNAPLGACGDCDGLGVRLVSDPELIIP CCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEC DKSLSINQGGVVYFKNFLNTDNLEQKFKILCDYYYIDMNLPIDQLTNKQIKAILRGSEEQ CCCCCCCCCCEEEEECCCCCCCHHHHHHEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCE IEIKLLSSSGRRYDSYDFVEGVADLIQRRYFETKSEEIRKYTKFMSSSVCQSCDGARLNP EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC TALSIKIADKNIFDFTKMSIQDELEFILNVELTQTQAQIANLVLTEITNRISFLNEVGLG EEEEEEEECCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC YLDLARTATTLSGGEAQRIRLAKQIGSQLTGILYVLDEPSIGLHQRDNDKLIKTLKHLRD HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH LGNTLIVVEHDEDTMKTADIVDVGPQAGEHGGQITFSGTYDEILKSDTITGRYLSGKESI CCCEEEEEECCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCCCEEECCCCCC PVPKKRRSGNGQKIDIVGARENNLKNVNVSIPLNKFIAITGVSGSGKSTLLEDIIYKGIR CCCHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH KNLARETIVTGKFSKMNGLENIDKVIFISQEPIGKTPRSNPATYTGVFDDIRDLFTNLPE HHHHHHHHCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHCCCH AKIRGYKKGRFSFNVPGGRCEHCFGDGVITISMQFMPSVEVVCEICEGKRYNDETLQVKF HHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEE KEKTIADVLNMTVETAAAFFENIPSIKDKLDTILEVGLGYIRLGQSATTLSGGEAQRIKL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEE STYLLKKQTGKTMFLLDEPTTGLHIDDVKRLVHVLNKLVDLGNTVVAIEHNLDFIKVADH HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHH VIDLGPEGGIGGGLIVAAGTPEQVADTKGSYTGTYLKEYLYNDFSR HHCCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]