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The map label for this gene is yhcM [H]

Identifier: 50085428

GI number: 50085428

Start: 2300800

End: 2301942

Strand: Reverse

Name: yhcM [H]

Synonym: ACIAD2336

Alternate gene names: 50085428

Gene position: 2301942-2300800 (Counterclockwise)

Preceding gene: 50085429

Following gene: 50085427

Centisome position: 63.97

GC content: 40.51

Gene sequence:

>1143_bases
ATGTCAAATACCAGCTCTTCTCATAATACGGCCTTTACGCCATCTTCCCCAGCAGAACGTTATGCACAAGCTTTAGCGTC
GGGACAGTTCATGCCAGATGAAGCTCAGGCCCAAGCAGTTCAGGAGTTAGAGCGAGTTTGGCAAGAGTTATTAAGTCGTT
ATAAAGCCTCAAAAAAAGCATTTCGGCGTTTCCGACGTCAGACTTCACCAAAAGGTGTGTACATGTGGGGAGGCGTAGGT
CGTGGTAAAACCTGGTTAATGGATCAGTTTTATGATTCCATTCCATTTCGCCGTAAGACACGGATGCACTTCCATCATTT
CATGCAACATGTGCATCGTGAGCTCAATAAACTTTCTGGTCAGCGTAACCCGCTGGATTTAGTTGCAGATCAAATTTATA
AAGACGCGGTTATTATCTGCTTTGATGAGTTTTTTGTATCTAACGTCACTGATGCCATGATTCTGAGTGATTTATTTCAA
AAACTGTTTAATCGTGGTGTTACATTGGTTGCCACTTCAAATATTGCACCAGACGGATTGTATAAAAACGGGATACATCG
TGATCGTTTTTTACCTACCATTGAATTGGTACAGAAAAATTGTACAATTCTGAACGTCGATGCAGGGGTAGATTATCGAT
TACGCGTATTGAAACAGGCACAGCTCTTTAAACATCCTTTGACTGACGATGCTAAGATCTGGATGTCACAACGTTTTAGT
GCGATTACTCGTTCACAGATCGTTTCTCAACAACCCATTACGATTAATAATCGTGTTGTTGAAACTTTGGGGCATACTGA
GGATGTATTATGGTGTGAGTTTTCTGAGCTATGCTTGAAGCCACGTAGTCCTGCCGATTTCATTGAAATTGCGAATATTT
ACAACACGGTACTGGTCAGTAATGTTCCCCATTTAACGGATTATTTATCTGAAGGAACACGTCGTTTTATTTATCTTGTT
GATGAATTTTATGATCGTGGTGTTAAGCTGCTACTCACTTCGCAAGATTCAATTATTGAGATTTACGAGGGTGAAAAACT
GGCTTTTGAGATTGAACGTACACGTTCACGATTGCTCGAAATGCAATCTGATGAATATTTGCACTCTGAACACCGCCATA
TCAATTCCGAAAATAACTCATAA

Upstream 100 bases:

>100_bases
ATGGCCGATAAAAATTACTCTTGGTATGCATCCAAAGTTCTATATGTATAGAACCAATATCCAATATACTTTTAACAGAC
CCAGATAGCATTAGAAAGAT

Downstream 100 bases:

>100_bases
AGATGTGTAAGGCGTTCATTCTGAACGCCTTTATTATATAAAAATAAGAATAAAATTTATTTTGCAAATGTATTTCATAA
TTTATAGATTTTGATATAAC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MSNTSSSHNTAFTPSSPAERYAQALASGQFMPDEAQAQAVQELERVWQELLSRYKASKKAFRRFRRQTSPKGVYMWGGVG
RGKTWLMDQFYDSIPFRRKTRMHFHHFMQHVHRELNKLSGQRNPLDLVADQIYKDAVIICFDEFFVSNVTDAMILSDLFQ
KLFNRGVTLVATSNIAPDGLYKNGIHRDRFLPTIELVQKNCTILNVDAGVDYRLRVLKQAQLFKHPLTDDAKIWMSQRFS
AITRSQIVSQQPITINNRVVETLGHTEDVLWCEFSELCLKPRSPADFIEIANIYNTVLVSNVPHLTDYLSEGTRRFIYLV
DEFYDRGVKLLLTSQDSIIEIYEGEKLAFEIERTRSRLLEMQSDEYLHSEHRHINSENNS

Sequences:

>Translated_380_residues
MSNTSSSHNTAFTPSSPAERYAQALASGQFMPDEAQAQAVQELERVWQELLSRYKASKKAFRRFRRQTSPKGVYMWGGVG
RGKTWLMDQFYDSIPFRRKTRMHFHHFMQHVHRELNKLSGQRNPLDLVADQIYKDAVIICFDEFFVSNVTDAMILSDLFQ
KLFNRGVTLVATSNIAPDGLYKNGIHRDRFLPTIELVQKNCTILNVDAGVDYRLRVLKQAQLFKHPLTDDAKIWMSQRFS
AITRSQIVSQQPITINNRVVETLGHTEDVLWCEFSELCLKPRSPADFIEIANIYNTVLVSNVPHLTDYLSEGTRRFIYLV
DEFYDRGVKLLLTSQDSIIEIYEGEKLAFEIERTRSRLLEMQSDEYLHSEHRHINSENNS
>Mature_379_residues
SNTSSSHNTAFTPSSPAERYAQALASGQFMPDEAQAQAVQELERVWQELLSRYKASKKAFRRFRRQTSPKGVYMWGGVGR
GKTWLMDQFYDSIPFRRKTRMHFHHFMQHVHRELNKLSGQRNPLDLVADQIYKDAVIICFDEFFVSNVTDAMILSDLFQK
LFNRGVTLVATSNIAPDGLYKNGIHRDRFLPTIELVQKNCTILNVDAGVDYRLRVLKQAQLFKHPLTDDAKIWMSQRFSA
ITRSQIVSQQPITINNRVVETLGHTEDVLWCEFSELCLKPRSPADFIEIANIYNTVLVSNVPHLTDYLSEGTRRFIYLVD
EFYDRGVKLLLTSQDSIIEIYEGEKLAFEIERTRSRLLEMQSDEYLHSEHRHINSENNS

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=430, Percent_Identity=31.3953488372093, Blast_Score=224, Evalue=9e-59,
Organism=Escherichia coli, GI1789627, Length=368, Percent_Identity=45.3804347826087, Blast_Score=350, Evalue=6e-98,
Organism=Caenorhabditis elegans, GI17505769, Length=421, Percent_Identity=30.6413301662708, Blast_Score=218, Evalue=4e-57,
Organism=Saccharomyces cerevisiae, GI6320783, Length=306, Percent_Identity=33.3333333333333, Blast_Score=154, Evalue=2e-38,
Organism=Drosophila melanogaster, GI20129913, Length=431, Percent_Identity=32.0185614849188, Blast_Score=199, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44095; Mature: 43963

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTSSSHNTAFTPSSPAERYAQALASGQFMPDEAQAQAVQELERVWQELLSRYKASKKA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRRFRRQTSPKGVYMWGGVGRGKTWLMDQFYDSIPFRRKTRMHFHHFMQHVHRELNKLSG
HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
QRNPLDLVADQIYKDAVIICFDEFFVSNVTDAMILSDLFQKLFNRGVTLVATSNIAPDGL
CCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH
YKNGIHRDRFLPTIELVQKNCTILNVDAGVDYRLRVLKQAQLFKHPLTDDAKIWMSQRFS
HHCCCCHHHCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AITRSQIVSQQPITINNRVVETLGHTEDVLWCEFSELCLKPRSPADFIEIANIYNTVLVS
HHHHHHHHCCCCCEECHHHHHHHCCCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHC
NVPHLTDYLSEGTRRFIYLVDEFYDRGVKLLLTSQDSIIEIYEGEKLAFEIERTRSRLLE
CCCHHHHHHHCCHHHEEHHHHHHHCCCEEEEEECCCCEEEEECCCEEEEHHHHHHHHHHH
MQSDEYLHSEHRHINSENNS
HCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNTSSSHNTAFTPSSPAERYAQALASGQFMPDEAQAQAVQELERVWQELLSRYKASKKA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRRFRRQTSPKGVYMWGGVGRGKTWLMDQFYDSIPFRRKTRMHFHHFMQHVHRELNKLSG
HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
QRNPLDLVADQIYKDAVIICFDEFFVSNVTDAMILSDLFQKLFNRGVTLVATSNIAPDGL
CCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCH
YKNGIHRDRFLPTIELVQKNCTILNVDAGVDYRLRVLKQAQLFKHPLTDDAKIWMSQRFS
HHCCCCHHHCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AITRSQIVSQQPITINNRVVETLGHTEDVLWCEFSELCLKPRSPADFIEIANIYNTVLVS
HHHHHHHHCCCCCEECHHHHHHHCCCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHC
NVPHLTDYLSEGTRRFIYLVDEFYDRGVKLLLTSQDSIIEIYEGEKLAFEIERTRSRLLE
CCCHHHHHHHCCHHHEEHHHHHHHCCCEEEEEECCCCEEEEECCCEEEEHHHHHHHHHHH
MQSDEYLHSEHRHINSENNS
HCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]