Click here to switch to the map view.

The map label for this gene is rimN

Identifier: 50083490

GI number: 50083490

Start: 204236

End: 204814

Strand: Reverse

Name: rimN

Synonym: ACIAD0208

Alternate gene names: 50083490

Gene position: 204814-204236 (Counterclockwise)

Preceding gene: 50083491

Following gene: 50083477

Centisome position: 5.69

GC content: 45.08

Gene sequence:

>579_bases
TTGATTATGCTGACTACCTCAGTCGCTGAAGCCGCACATTGTTTAAAGCAGGGACAGGTTTTGGCATATCCGACAGAGGC
TGTTTGGGGATTAGGATGCGATCCATTTAATGAACTGGCATTTCGCCAGATTTTAGCGCTGAAACAACGTCCTATCGAAA
AAGGCGTTATTTTACTTGCTGGTGATGTGGGACAGATTGAATATCTTCTAGCTGATCTGGATGAAACAATTCGTGCTCAG
GTCATTGAAAGCTGGACGACGCGTTCTGTAGATGAACGAGCTATTACCTGGCTATTGCCTGTAAGTTCAGATCAGGTTCC
AACATGGATTACAGGCCAACATCATCAGGTTGCGGTGCGGGTCACTAATCATCCTTTATGTGTTGCGCTTTGCCATGCGT
TTAATGGATTCATCGTTTCGACCAGTGCCAATCCAGCTGGATTAGAGCCTGCACGCTCTTTACAAGAGGCCAGTGCTTAT
TTTGGTCAAGGCTTAAATTATCTAAATGGTGATCTAGGCTTAAGTCAGCAACCGAGTCGTATTATCGATGCAACAACAGG
CAGAGTCATACGTGATTGA

Upstream 100 bases:

>100_bases
ACTTGAACTACTGGGTGTGTGTATTCAACAATCAGGTCGCTATCTGCGTTGTAGAAGCCCCTATTAAGGTTCACAATGAG
TTTATTTTTAAGTTTGGAGT

Downstream 100 bases:

>100_bases
TATCAGTCATCAATTAAATGCAAATAATTATCGTTAATTTATATTAATTATCCACTGCAGACTTAAGATTTGGCCCAAAG
TCAGAATAAAAAAAAGCTCA

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MIMLTTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVGQIEYLLADLDETIRAQ
VIESWTTRSVDERAITWLLPVSSDQVPTWITGQHHQVAVRVTNHPLCVALCHAFNGFIVSTSANPAGLEPARSLQEASAY
FGQGLNYLNGDLGLSQQPSRIIDATTGRVIRD

Sequences:

>Translated_192_residues
MIMLTTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVGQIEYLLADLDETIRAQ
VIESWTTRSVDERAITWLLPVSSDQVPTWITGQHHQVAVRVTNHPLCVALCHAFNGFIVSTSANPAGLEPARSLQEASAY
FGQGLNYLNGDLGLSQQPSRIIDATTGRVIRD
>Mature_192_residues
MIMLTTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVGQIEYLLADLDETIRAQ
VIESWTTRSVDERAITWLLPVSSDQVPTWITGQHHQVAVRVTNHPLCVALCHAFNGFIVSTSANPAGLEPARSLQEASAY
FGQGLNYLNGDLGLSQQPSRIIDATTGRVIRD

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=187, Percent_Identity=41.1764705882353, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_ACIAD (Q6FFH9)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_045000.1
- HSSP:   P45748
- ProteinModelPortal:   Q6FFH9
- SMR:   Q6FFH9
- STRING:   Q6FFH9
- GeneID:   2879022
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD0208
- NMPDR:   fig|62977.3.peg.352
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   Q6FFH9
- ProtClustDB:   CLSK706856
- BioCyc:   ASP62977:ACIAD0208-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20950; Mature: 20950

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMLTTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLA
CEEEECHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
GDVGQIEYLLADLDETIRAQVIESWTTRSVDERAITWLLPVSSDQVPTWITGQHHQVAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEECCCCEEEEEE
VTNHPLCVALCHAFNGFIVSTSANPAGLEPARSLQEASAYFGQGLNYLNGDLGLSQQPSR
ECCCCHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
IIDATTGRVIRD
HHCCCCCCEECC
>Mature Secondary Structure
MIMLTTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLA
CEEEECHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
GDVGQIEYLLADLDETIRAQVIESWTTRSVDERAITWLLPVSSDQVPTWITGQHHQVAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEECCCCEEEEEE
VTNHPLCVALCHAFNGFIVSTSANPAGLEPARSLQEASAYFGQGLNYLNGDLGLSQQPSR
ECCCCHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
IIDATTGRVIRD
HHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA