Click here to switch to the map view.

The map label for this gene is yybR [H]

Identifier: 49481738

GI number: 49481738

Start: 3190766

End: 3191146

Strand: Reverse

Name: yybR [H]

Synonym: BT9727_3120

Alternate gene names: 49481738

Gene position: 3191146-3190766 (Counterclockwise)

Preceding gene: 49481605

Following gene: 49479270

Centisome position: 60.93

GC content: 34.65

Gene sequence:

>381_bases
ATGGATTGTTCAAACGAAAATAATGTGAATTACCCATTTTTAAATAAATATTCTTGTCCAGTTGAAGCGATGGTTGAGGT
CATTGGAGGGAAATGGAAAGGGGTTATTTTGTATCATTTATTAGATGGTACAAAGAGATTTAATGAATTAAAAAGATTAA
AACCTAATATCACACAAAGAATGTTAACATTGCAGCTAAGGGAACTCGAAGCGGATGGCATTATACATCGTGAAGTGTAC
CGTGAAGTACCTCCAAAAGTAGAATATTCGCTAACGGAGCTTGGTGAATCACTTCGTCCAATGATTCTATTAATGATGGA
GTGGGCGACTCATAATATGGAGAAAGTTTTGGAGAGTAGGAATACGAAAAATAATAGTTAA

Upstream 100 bases:

>100_bases
TGTAACCAAATTATATTTTTAAAGTAACATAGAAACAAGTACGCACATTTATGTGGTATAGTATCAAAAAAGATACTAAT
GTTAAGGGAAGGGATTTATT

Downstream 100 bases:

>100_bases
GAGTTGTGGAAATAAAAGGTGTTTTCCATATGTGAAGACACCTTTTATTTCTGTATTTTTACTTTTTAACTTCAACTGCT
GAAGTTGCGAAGTCATTCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATHNMEKVLESRNTKNNS

Sequences:

>Translated_126_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATHNMEKVLESRNTKNNS
>Mature_126_residues
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTLQLRELEADGIIHREVY
REVPPKVEYSLTELGESLRPMILLMMEWATHNMEKVLESRNTKNNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=105, Percent_Identity=36.1904761904762, Blast_Score=79, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14753; Mature: 14753

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPMILLMMEWATHNMEKVLESR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTKNNS
CCCCCC
>Mature Secondary Structure
MDCSNENNVNYPFLNKYSCPVEAMVEVIGGKWKGVILYHLLDGTKRFNELKRLKPNITQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
MLTLQLRELEADGIIHREVYREVPPKVEYSLTELGESLRPMILLMMEWATHNMEKVLESR
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTKNNS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]