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The map label for this gene is yjdI [H]

Identifier: 49479270

GI number: 49479270

Start: 3187275

End: 3187751

Strand: Reverse

Name: yjdI [H]

Synonym: BT9727_3116

Alternate gene names: 49479270

Gene position: 3187751-3187275 (Counterclockwise)

Preceding gene: 49481738

Following gene: 49478180

Centisome position: 60.86

GC content: 35.22

Gene sequence:

>477_bases
ATGAAAAAAGATAAAACAAATGCGATGCGAATATTAGATAAAGAAAAAATTGAATATTCGATGATGACATATGATCCAGA
CGATGGAAAAATTGATGGTGTATCAGTAGCCGAGAAAATTGGACGAGAAGTGAGAGAAGTATATAAAACGTTAATCGCTC
AAGGAAATAGTAAAAATTATCATGTGTTTATTATTCCGGTGGATGAGGAACTAAATTTAAAAGCTGCCGCAAAAGCAGTA
AGTGAAAAGAAAATTGAAATGATTCCTGTAAAAGATATTACGAAAGTGTCAGGATATATTCGCGGTGGTTGTTCACCGGT
CGGAATGAAAAAGTTATTTTCTACATGTATCGATGCGAGTGCTCAATCACTTGAAACGATTATTGTAAGCGGCGGGAAAA
TAGGTATACAAATTGAGCTGAAAGTGGATGATTTGGCAAAAGTGACGAGAGCGCAGTTTGGTGAAATAACGAAATGA

Upstream 100 bases:

>100_bases
TATTTTCAGTTTTGAAATATACGTGAAGTTATGTAGGAGAAATGGAAAAGGGTGTATAATAAAACTTAATAATATGAAAT
AACCGTTTAAGGAGATCACT

Downstream 100 bases:

>100_bases
TTATACATAGGGAAAGAAGTTCTAGTTTTATAGGTTAGTTAGCCCATTATGGGGGCTAATTATCCTTTTTTTGCTACTGA
TAACGATAATTATGTAAGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKDKTNAMRILDKEKIEYSMMTYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDASAQSLETIIVSGGKIGIQIELKVDDLAKVTRAQFGEITK

Sequences:

>Translated_158_residues
MKKDKTNAMRILDKEKIEYSMMTYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDASAQSLETIIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
>Mature_158_residues
MKKDKTNAMRILDKEKIEYSMMTYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDASAQSLETIIVSGGKIGIQIELKVDDLAKVTRAQFGEITK

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=42.3076923076923, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17429; Mature: 17429

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDKTNAMRILDKEKIEYSMMTYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDAS
EEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
AQSLETIIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
HHHHEEEEEECCEEEEEEEEEHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKDKTNAMRILDKEKIEYSMMTYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDAS
EEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
AQSLETIIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
HHHHEEEEEECCEEEEEEEEEHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]