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The map label for this gene is smpB

Identifier: 46447341

GI number: 46447341

Start: 2046098

End: 2046559

Strand: Direct

Name: smpB

Synonym: pc1707

Alternate gene names: 46447341

Gene position: 2046098-2046559 (Clockwise)

Preceding gene: 46447340

Following gene: 46447342

Centisome position: 84.74

GC content: 35.71

Gene sequence:

>462_bases
ATGAAAGATAAACACAGTGACCTGGTTTCAAACCGACGGGCCACTCATGATTATGAAATTTTAGAAACATTTGAAACCGG
TATTGTTTTACAAGGAACAGAAATTAAATCTATTCGAGATCATGGAGCAACTTTGCAAGATGCCTATGTAAAAGTAATTC
ACAATGAACTTTGGCTTATTGGATGTAACATTGCTCATTATCGTTTTGGCAATATTCATAACCATGAAGAAAAAAGAGAT
CGCAAACTGCTCATGCACAAAAGAGAGATCAAAAAATGTAAAGGAGCCATACAAGAAAAAGGCCTTGCATTAATCCCCTT
AGCTTTATATCTCAAACAGGGGCGCATTAAAGTTCGCATAGCTATTGCAAAAGGAAAAAAATCTTTCGATAAACGTGCCG
ATCTTAAAGAACGAGATGATAAACGTCAAATGCAACAAGCCCTTAAACAACAACAGTACTAA

Upstream 100 bases:

>100_bases
TGTGACTTATATCTTTAATTCTTTAAAATTTACTTCTATATTTAACTTTGCTTATGCAGAAACGACTATAACTTCATTTA
ACACCCGATGATTAACTAAT

Downstream 100 bases:

>100_bases
ACTAAATTTGGTTTGTATTTATCTGGAATTTTTTTTTATTTTTTAGGAAATATAGGAAAAATGAATTCAACGCCAAACAA
TGGAAGTTTATGCTCAAACT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLIGCNIAHYRFGNIHNHEEKRD
RKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRIAIAKGKKSFDKRADLKERDDKRQMQQALKQQQY

Sequences:

>Translated_153_residues
MKDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLIGCNIAHYRFGNIHNHEEKRD
RKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRIAIAKGKKSFDKRADLKERDDKRQMQQALKQQQY
>Mature_153_residues
MKDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLIGCNIAHYRFGNIHNHEEKRD
RKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRIAIAKGKKSFDKRADLKERDDKRQMQQALKQQQY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=151, Percent_Identity=39.7350993377483, Blast_Score=106, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_PARUW (Q6MAG8)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008706.1
- ProteinModelPortal:   Q6MAG8
- SMR:   Q6MAG8
- STRING:   Q6MAG8
- GeneID:   2780065
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1707
- NMPDR:   fig|264201.1.peg.1707
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   CPRO264201:PC1707-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17914; Mature: 17914

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLI
CCCCHHHHHHCCCCCCHHHHHHHHHCCEEEECCCHHHHHHCCCHHHHHHHHHHHCCEEEE
GCNIAHYRFGNIHNHEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRI
ECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCEEEEE
AIAKGKKSFDKRADLKERDDKRQMQQALKQQQY
EEECCCCHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLI
CCCCHHHHHHCCCCCCHHHHHHHHHCCEEEECCCHHHHHHCCCHHHHHHHHHHHCCEEEE
GCNIAHYRFGNIHNHEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRI
ECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCEEEEE
AIAKGKKSFDKRADLKERDDKRQMQQALKQQQY
EEECCCCHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA