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The map label for this gene is recF

Identifier: 46447340

GI number: 46447340

Start: 2044842

End: 2045921

Strand: Direct

Name: recF

Synonym: pc1706

Alternate gene names: 46447340

Gene position: 2044842-2045921 (Clockwise)

Preceding gene: 46447339

Following gene: 46447341

Centisome position: 84.69

GC content: 35.37

Gene sequence:

>1080_bases
ATGACCCTTCGCTCTCTGTACTTGCAACATTTTCGCAATTATGAAGAAGCTTATTTGGAATTTAGTCCTCAATTCAATTT
AATTTGTGGGCCCAATGCTAAAGGTAAAACAACTCTTTTAGAAGCTATCCATTGCTTAATGATTGGGCGTTCTTTTAGAA
CTTCTCATTATCCTGATTTAATTCAGCAACAATTTGAATCTTTTTTCTTAGAAGCTCAATTTTACAAACATGGAATCGAG
CAAACACTTAAATTTGGCTTTCATACTACCGATCGTAAAATCATTTATAACAGTACCCCTTTAGCCACACTATCAAATTT
GTTAGGCCTCATTCCAGGGGTTATCATCACTCCTGATGATGTTCAATTAGTTAAAGGTTCCCCTCAGCTAAGACGTCAAT
TTTTAGATATTCAAATTGCACAAGTCGACCCTCTTTATGTTCACCATTTAAATCGTTATGGGCGAGCTCTCAAGCAACGC
AATCATCTCCTTAAAATGAAACAACAAATATCGATTGATAGCTGGGAACAAGAAATGACACATTCAGCAGCTTATTTAAT
TCAACAAAGGTACCAAACAATTACTCATTTACAAAACCTTGCTCAAAAATATTATCATTTATTGTCGGGGGAAAATGATC
TTTTAACGCTTGAATATCGATCGATCGCAAATAGCAATTTGTCAATCGATGAAATTAAAAAGCTTCTTGTTAAACAACTC
TGCAAAAATAGGCAAAGAGAGATGCAGATTGGCTATACCTTAAGTGGCCCTCATAAAGATGACTTATTTGTCGCGATTGG
AGGGCGAGATATTCGTTATTTTGCAAGTGAAGGACAACAAAGGAGCTGCGTGAATGCTTTGCATTTCGCAGAGTGGAATC
GATTACATCAAAGAGGAGATGGCGATTTCCCTTTATTTATGATTGATGATATAGGAATGAGTTTAGATTCAAATAGAAAA
GACAGATTGGTTGAACAATTGCAATCTGTTGGACAGGTTTTTTTAACCACAACTGACCCTAAATTTCTCGATCATATAGA
TGCCGATAAAAAAATTTTTACCCTCCCTTTTTATAACTAA

Upstream 100 bases:

>100_bases
CTGGTATTATTACAGACAGCGCAGAATTAGCGAATTCATTAGACGCTTCTCCTCTTTTTGTAATTATGCCGATGCGCTTG
TCAGAAGATTAAATAGAATT

Downstream 100 bases:

>100_bases
ATATCAGAAATAACATTCGGTTTAATTCGTTAACAATGGCTGAACTTAAAAGAATAGCTTACTATCAAAAAAATCGTGTG
ACTTATATCTTTAATTCTTT

Product: putative DNA replication and repair protein recF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDLIQQQFESFFLEAQFYKHGIE
QTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVIITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQR
NHLLKMKQQISIDSWEQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVKQL
CKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQRGDGDFPLFMIDDIGMSLDSNRK
DRLVEQLQSVGQVFLTTTDPKFLDHIDADKKIFTLPFYN

Sequences:

>Translated_359_residues
MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDLIQQQFESFFLEAQFYKHGIE
QTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVIITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQR
NHLLKMKQQISIDSWEQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVKQL
CKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQRGDGDFPLFMIDDIGMSLDSNRK
DRLVEQLQSVGQVFLTTTDPKFLDHIDADKKIFTLPFYN
>Mature_358_residues
TLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDLIQQQFESFFLEAQFYKHGIEQ
TLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVIITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRN
HLLKMKQQISIDSWEQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVKQLC
KNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQRGDGDFPLFMIDDIGMSLDSNRKD
RLVEQLQSVGQVFLTTTDPKFLDHIDADKKIFTLPFYN

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=365, Percent_Identity=29.041095890411, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_PARUW (Q6MAG9)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008705.1
- ProteinModelPortal:   Q6MAG9
- STRING:   Q6MAG9
- GeneID:   2781076
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1706
- NMPDR:   fig|264201.1.peg.1706
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- PhylomeDB:   Q6MAG9
- ProtClustDB:   CLSK2762464
- BioCyc:   CPRO264201:PC1706-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 41803; Mature: 41672

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL
CCHHHHHHHHHHCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCHHCCCCCHHH
IQQQFESFFLEAQFYKHGIEQTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVIITPDD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCEEECCCC
VQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQISIDSWEQEMT
CEEECCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVKQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHH
CKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQRGD
HHCHHHHEEECEEECCCCCCCEEEEECCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHCCC
GDFPLFMIDDIGMSLDSNRKDRLVEQLQSVGQVFLTTTDPKFLDHIDADKKIFTLPFYN
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHCCCCCEEEECCCCC
>Mature Secondary Structure 
TLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL
CHHHHHHHHHHCHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCHHCCCCCHHH
IQQQFESFFLEAQFYKHGIEQTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVIITPDD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCEEECCCC
VQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQISIDSWEQEMT
CEEECCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVKQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHH
CKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQRGD
HHCHHHHEEECEEECCCCCCCEEEEECCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHCCC
GDFPLFMIDDIGMSLDSNRKDRLVEQLQSVGQVFLTTTDPKFLDHIDADKKIFTLPFYN
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA