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The map label for this gene is nusB [H]

Identifier: 46447257

GI number: 46447257

Start: 1943116

End: 1943580

Strand: Direct

Name: nusB [H]

Synonym: pc1623

Alternate gene names: 46447257

Gene position: 1943116-1943580 (Clockwise)

Preceding gene: 46447256

Following gene: 46447258

Centisome position: 80.48

GC content: 33.33

Gene sequence:

>465_bases
ATGACTGATCTGATCATGAATGAGTTATCTATTTCAAAAAAAAATGTTCGGCTCGCACAAGAGAAAGTTCAAAAAATTGT
GGTTCAGTTAGCAGAAATCGACTCAAAAATTAGTTCTGTCTCGCTTTCTTATCACTTCAATCGCATTCAAACTGTTACAA
AAAACATCTTGCGTTTAGGAGTTTTCGAACTTTTTTTTGAAACAGATATTCCTCAAAAAGTTGTCATTGCTGAAGCTATT
CGTTTATCTCGAAAATTTAGTACTCCAGAATCTGCTTCTTTTGTAAACGCATTATTAGACCAACTTTATCAAAAGAGTAA
AGGAGAAGAAGTCAATTCAAATCTGCTTGTCGAAAGTTCTCAAATCCTTGAACAAAGCGAACAAGTCGCTGCTGATTTTT
CTTTAGAAAGTCCTCTTAGCAAAGAAAAACATAATGAAATACTCGATTCCCATGAAAATACCTAA

Upstream 100 bases:

>100_bases
TACAATCTGGAAATTCATGGCACTATCTCAACAAAAATTTAGAGAAATCGTTCTGCAACTCCTTTACAGCCAAGATATCG
CTCACCCTGATGAAAATATC

Downstream 100 bases:

>100_bases
TCAATATCAAACGAACTGTCTATTAAAAGAGATCACAACATTTGGAATTGGGGGCCCCGCTAAGTATTTTGTTGAAGTTC
GCACAATTCCCGATATGCAA

Product: putative transcription termination factor, nusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTDLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFELFFETDIPQKVVIAEAI
RLSRKFSTPESASFVNALLDQLYQKSKGEEVNSNLLVESSQILEQSEQVAADFSLESPLSKEKHNEILDSHENT

Sequences:

>Translated_154_residues
MTDLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFELFFETDIPQKVVIAEAI
RLSRKFSTPESASFVNALLDQLYQKSKGEEVNSNLLVESSQILEQSEQVAADFSLESPLSKEKHNEILDSHENT
>Mature_153_residues
TDLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFELFFETDIPQKVVIAEAIR
LSRKFSTPESASFVNALLDQLYQKSKGEEVNSNLLVESSQILEQSEQVAADFSLESPLSKEKHNEILDSHENT

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17438; Mature: 17307

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFELFFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEEVNSNLLVESS
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QILEQSEQVAADFSLESPLSKEKHNEILDSHENT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFELFFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEEVNSNLLVESS
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QILEQSEQVAADFSLESPLSKEKHNEILDSHENT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA