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The map label for this gene is oppB [H]

Identifier: 46447137

GI number: 46447137

Start: 1791734

End: 1792669

Strand: Direct

Name: oppB [H]

Synonym: pc1503

Alternate gene names: 46447137

Gene position: 1791734-1792669 (Clockwise)

Preceding gene: 46447136

Following gene: 46447138

Centisome position: 74.21

GC content: 33.44

Gene sequence:

>936_bases
ATGTACCACGTCTATTTTTGTAGAAAATTTATTTATTTACTTAGCTCTCTTTGGATCATTATAACTTTAACTTTCATCCT
TATGAAAGCTGTTCCTGGGGATCCGTTTAATGACGAACAAGGATTAAGAACTGATATCCATCAGACCTTAATAAAAAAGC
ATGGTTTAGATCAGTCTGGAATTAATCAATATTTGAATTATCTCTCTCAATTATTGAAAGGTAATCTTGGCTATTCTTTG
AAATATCAAGGTCGATCAACTAATCAAATTATTCAAGAAAGCTTTCCTATTTCTGCTCAACTTGGTTTCCAAGCTATTTT
TATTGCTTTGATCGGCGGGGTAACCTTAGGATTAATTGGAGCTTTAAAGAAAAACAAATGGCAAGATTTTTTTATCTTAA
TCCTGACAGCTATCGGAACGTCAATTCCTAGTTTTATTTTAGCAACTTTTCTACAATATATTTTCGCTATTAAATGGGGT
GTGCTTCCTCTTGCTCAATGGGGAAATTTTAATCAAAGTATTCTCCCTTCATTATCTTTAGCTCTTCTCCCTATGGCGTT
CATCGCACGTTTAACACGAGCAAGTTTAATTGAAATTCTTAAAACTGATTATATTAAAGCTGCCCAAGCAAAAGGACTTC
CCTATTATCAAATACTTTATTCTCACGCTCTTCGCAATGCCTTACTTCCAGTCATAAGTTATCTTGGTCAATTACTTGCT
AATATTTTAGTGGGAAGTTTCATCATTGAAAAAATTTTCAGTATCCCAGGCCTAGGAGGATGGTTTGTAAATAGTGTTCT
CAGTAGAGACTATCCTGTTATCATGGGATTGACTCTTTTTTATAGCACTCTTTTGCTATTATCTGTCTTTATTGTTGATA
TCATTTACAGCTTATTAGACCCTCGCATTCAACTCATTCATAAGGAATTAGTATGA

Upstream 100 bases:

>100_bases
ATTATTTGAAAAAAGAAAATGTCCATGACGTTTATTTTTCAGAACTTGGTTATCTAGATTTGAAAAAAGCTTATCTTAGC
CCCCTTAATTAAAGATTGCT

Downstream 100 bases:

>100_bases
AATCCTCCCCCTCTCAATCAGATTTTACTCCCTTGGAGAAGTGGGAAGAAACTTTTGTGCCGCCATCCTATAGCAGACCC
TCTATTTTTAAACGTTTTCA

Product: oligo/dipeptide ABC transporter (permease) oppB

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KB [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MYHVYFCRKFIYLLSSLWIIITLTFILMKAVPGDPFNDEQGLRTDIHQTLIKKHGLDQSGINQYLNYLSQLLKGNLGYSL
KYQGRSTNQIIQESFPISAQLGFQAIFIALIGGVTLGLIGALKKNKWQDFFILILTAIGTSIPSFILATFLQYIFAIKWG
VLPLAQWGNFNQSILPSLSLALLPMAFIARLTRASLIEILKTDYIKAAQAKGLPYYQILYSHALRNALLPVISYLGQLLA
NILVGSFIIEKIFSIPGLGGWFVNSVLSRDYPVIMGLTLFYSTLLLLSVFIVDIIYSLLDPRIQLIHKELV

Sequences:

>Translated_311_residues
MYHVYFCRKFIYLLSSLWIIITLTFILMKAVPGDPFNDEQGLRTDIHQTLIKKHGLDQSGINQYLNYLSQLLKGNLGYSL
KYQGRSTNQIIQESFPISAQLGFQAIFIALIGGVTLGLIGALKKNKWQDFFILILTAIGTSIPSFILATFLQYIFAIKWG
VLPLAQWGNFNQSILPSLSLALLPMAFIARLTRASLIEILKTDYIKAAQAKGLPYYQILYSHALRNALLPVISYLGQLLA
NILVGSFIIEKIFSIPGLGGWFVNSVLSRDYPVIMGLTLFYSTLLLLSVFIVDIIYSLLDPRIQLIHKELV
>Mature_311_residues
MYHVYFCRKFIYLLSSLWIIITLTFILMKAVPGDPFNDEQGLRTDIHQTLIKKHGLDQSGINQYLNYLSQLLKGNLGYSL
KYQGRSTNQIIQESFPISAQLGFQAIFIALIGGVTLGLIGALKKNKWQDFFILILTAIGTSIPSFILATFLQYIFAIKWG
VLPLAQWGNFNQSILPSLSLALLPMAFIARLTRASLIEILKTDYIKAAQAKGLPYYQILYSHALRNALLPVISYLGQLLA
NILVGSFIIEKIFSIPGLGGWFVNSVLSRDYPVIMGLTLFYSTLLLLSVFIVDIIYSLLDPRIQLIHKELV

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=302, Percent_Identity=41.3907284768212, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1787053, Length=302, Percent_Identity=32.7814569536424, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=31.5634218289086, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789888, Length=305, Percent_Identity=30.8196721311475, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=33.6507936507937, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=30.6049822064057, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=26.7409470752089, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35000; Mature: 35000

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHVYFCRKFIYLLSSLWIIITLTFILMKAVPGDPFNDEQGLRTDIHQTLIKKHGLDQSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
INQYLNYLSQLLKGNLGYSLKYQGRSTNQIIQESFPISAQLGFQAIFIALIGGVTLGLIG
HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ALKKNKWQDFFILILTAIGTSIPSFILATFLQYIFAIKWGVLPLAQWGNFNQSILPSLSL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALLPMAFIARLTRASLIEILKTDYIKAAQAKGLPYYQILYSHALRNALLPVISYLGQLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILVGSFIIEKIFSIPGLGGWFVNSVLSRDYPVIMGLTLFYSTLLLLSVFIVDIIYSLLD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PRIQLIHKELV
HHHHHHHHHCC
>Mature Secondary Structure
MYHVYFCRKFIYLLSSLWIIITLTFILMKAVPGDPFNDEQGLRTDIHQTLIKKHGLDQSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
INQYLNYLSQLLKGNLGYSLKYQGRSTNQIIQESFPISAQLGFQAIFIALIGGVTLGLIG
HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ALKKNKWQDFFILILTAIGTSIPSFILATFLQYIFAIKWGVLPLAQWGNFNQSILPSLSL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALLPMAFIARLTRASLIEILKTDYIKAAQAKGLPYYQILYSHALRNALLPVISYLGQLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILVGSFIIEKIFSIPGLGGWFVNSVLSRDYPVIMGLTLFYSTLLLLSVFIVDIIYSLLD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PRIQLIHKELV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]