| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446743
Identifier: 46446743
GI number: 46446743
Start: 1330049
End: 1330588
Strand: Direct
Name: 46446743
Synonym: pc1109
Alternate gene names: NA
Gene position: 1330049-1330588 (Clockwise)
Preceding gene: 46446740
Following gene: 46446744
Centisome position: 55.09
GC content: 37.96
Gene sequence:
>540_bases ATGACCCAACAAACCAAAATGATCGAAGAAGATTTGGCTATTCGACTTCCCAACCATGATATCTTATCCACCCCAGTCAC TTTAGAAGCCGTTGTATTCTACGCTTCTGAAAGTGAAAAAATCAAAAAGAAAATTGATCATCTTGCAGCAGAAGTTAGCC AAAAACAAGATAGAATCAAGTTTGTTAATGAAATTATTCAAGAAATTAATAACTCCATAGATCCGTCGACGGGAAAAGTG GACTTAAGAAACAAAGCCGAATTTCTAGAAAAATTAAACACTGCAAAAGGAATGGGCATCAATATACCGATGGATTCCAA AACTGAGCATCCCAAAGCCCATTTTAATGCCGAAGAAAGGGAGCGTTTTTTGCAAAATCTAGGTTTATCTGCTGATGCAT GGGATAAAGAAAACAAGCAACATACCCAAAAAATGCAAATGTATCTAGATGAATCTAATCGTTATTTGACTTTAGCGACA CAAGCGATGAAGTACGAAGACAAACCCAAGAGGGCGGCCCTCGCTGCAATGGGAAGATAA
Upstream 100 bases:
>100_bases AAAGTTAAATATTTACCTAATTAGACGGATGTGATATAATTAATCTTAATTATAATAATACTAACCTTTTAAGTTAAAAT TTTTTCAAAATGGAGGTTTT
Downstream 100 bases:
>100_bases GATGACCGCATCTAATTACCGCTTAGTCGACCTTGAAAAAAAAGAGATAATGGCAAAAACTAAAAATTTGCATTATATGG CCTATCATCTTTATCGAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTQQTKMIEEDLAIRLPNHDILSTPVTLEAVVFYASESEKIKKKIDHLAAEVSQKQDRIKFVNEIIQEINNSIDPSTGKV DLRNKAEFLEKLNTAKGMGINIPMDSKTEHPKAHFNAEERERFLQNLGLSADAWDKENKQHTQKMQMYLDESNRYLTLAT QAMKYEDKPKRAALAAMGR
Sequences:
>Translated_179_residues MTQQTKMIEEDLAIRLPNHDILSTPVTLEAVVFYASESEKIKKKIDHLAAEVSQKQDRIKFVNEIIQEINNSIDPSTGKV DLRNKAEFLEKLNTAKGMGINIPMDSKTEHPKAHFNAEERERFLQNLGLSADAWDKENKQHTQKMQMYLDESNRYLTLAT QAMKYEDKPKRAALAAMGR >Mature_178_residues TQQTKMIEEDLAIRLPNHDILSTPVTLEAVVFYASESEKIKKKIDHLAAEVSQKQDRIKFVNEIIQEINNSIDPSTGKVD LRNKAEFLEKLNTAKGMGINIPMDSKTEHPKAHFNAEERERFLQNLGLSADAWDKENKQHTQKMQMYLDESNRYLTLATQ AMKYEDKPKRAALAAMGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20532; Mature: 20400
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQTKMIEEDLAIRLPNHDILSTPVTLEAVVFYASESEKIKKKIDHLAAEVSQKQDRIK CCCHHHHHHHHHEEECCCCCCCCCCCEEEHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH FVNEIIQEINNSIDPSTGKVDLRNKAEFLEKLNTAKGMGINIPMDSKTEHPKAHFNAEER HHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHH ERFLQNLGLSADAWDKENKQHTQKMQMYLDESNRYLTLATQAMKYEDKPKRAALAAMGR HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHCCC >Mature Secondary Structure TQQTKMIEEDLAIRLPNHDILSTPVTLEAVVFYASESEKIKKKIDHLAAEVSQKQDRIK CCHHHHHHHHHEEECCCCCCCCCCCEEEHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH FVNEIIQEINNSIDPSTGKVDLRNKAEFLEKLNTAKGMGINIPMDSKTEHPKAHFNAEER HHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHH ERFLQNLGLSADAWDKENKQHTQKMQMYLDESNRYLTLATQAMKYEDKPKRAALAAMGR HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA