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The map label for this gene is ybeY [C]

Identifier: 46446688

GI number: 46446688

Start: 1254144

End: 1254596

Strand: Direct

Name: ybeY [C]

Synonym: pc1054

Alternate gene names: 46446688

Gene position: 1254144-1254596 (Clockwise)

Preceding gene: 46446687

Following gene: 46446689

Centisome position: 51.94

GC content: 34.22

Gene sequence:

>453_bases
TTGATTGTGATTATTAACGCCTCCAACGAACAGCATGATTTAAAATTTTCGCTTGCAAATTTAGATGCTATTGTTAAAGA
AGTTATCCAAAAAGAGCAGCAAACATGTGATGAAGTCAATATTTACTTTGTCGATACTGCTACTATCTGTAAGCTTCATC
TAGATTATTTTAATGATGACACACCCACAGACTGCATTTCATTTCCCATGGATAAAGACGAAAATTCTCCCTATAAGATC
TTAGGGGAAATTTTTGTTTGCCCTCAAACCGCAATTGAATACGCTCTTTCCCATGAACTAGACCCGTACGAAGAAACAAC
GCTATATCTTGTTCATGGCCTATTGCATTTAATGGGATATGATGATTTAGAAGAAAATGATTTCCTCATAATGAAAGAAG
CGGAGATAAGACATATGACCCATTTAAAAAAACTTGAGCTATATATAAAGTAA

Upstream 100 bases:

>100_bases
AAAAAGAAATACAAAACTCTGGTTAAACTTCTCGCCTGGTTATTGATATTTTTCTACCCATAAACTTAAATTAATTTTTT
TATAAACTAACAAATCTTTT

Downstream 100 bases:

>100_bases
TCGATTTTTAACTTGCGAAATTTAATTTTTGCCATTACTTTAAAAGAACTAGTTTTTGAAAAATTAACTATAAATTCTCC
CTCTTTTTACCTTCTTCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MIVIINASNEQHDLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDDTPTDCISFPMDKDENSPYKI
LGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGYDDLEENDFLIMKEAEIRHMTHLKKLELYIK

Sequences:

>Translated_150_residues
MIVIINASNEQHDLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDDTPTDCISFPMDKDENSPYKI
LGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGYDDLEENDFLIMKEAEIRHMTHLKKLELYIK
>Mature_150_residues
MIVIINASNEQHDLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDDTPTDCISFPMDKDENSPYKI
LGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGYDDLEENDFLIMKEAEIRHMTHLKKLELYIK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PARUW (Q6MCC1)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008053.1
- ProteinModelPortal:   Q6MCC1
- SMR:   Q6MCC1
- STRING:   Q6MCC1
- GeneID:   2779977
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1054
- NMPDR:   fig|264201.1.peg.1054
- eggNOG:   COG0319
- OMA:   YEEISRY
- ProtClustDB:   CLSK2762304
- BioCyc:   CPRO264201:PC1054-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17475; Mature: 17475

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIINASNEQHDLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDD
CEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHEEEEEEHHCCCC
TPTDCISFPMDKDENSPYKILGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGY
CCCHHEECCCCCCCCCCHHEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
DDLEENDFLIMKEAEIRHMTHLKKLELYIK
CCCCCCCEEEEECHHHHHHHHHHHHEEEEC
>Mature Secondary Structure
MIVIINASNEQHDLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDD
CEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHEEEEEEHHCCCC
TPTDCISFPMDKDENSPYKILGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGY
CCCHHEECCCCCCCCCCHHEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
DDLEENDFLIMKEAEIRHMTHLKKLELYIK
CCCCCCCEEEEECHHHHHHHHHHHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA