Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446665

Identifier: 46446665

GI number: 46446665

Start: 1217895

End: 1219556

Strand: Reverse

Name: 46446665

Synonym: pc1031

Alternate gene names: NA

Gene position: 1219556-1217895 (Counterclockwise)

Preceding gene: 46446666

Following gene: 46446664

Centisome position: 50.51

GC content: 38.87

Gene sequence:

>1662_bases
GTGGATGAAAATACTCCCTTAGACAATCCTTTGCCTAATCTAGAAGAAACTAGTGCGTCAACGATTCAACCTTCCGCTCT
TTCACCTTTATCTGAAGAACTTCAACTAAACTTTCACGAGGGAACTTCTCTGACTATTTCTCACTCTCAGCTAGCTTTGT
TAAGGGAAAAATCCCTCTATTTTAAAAATTTGTGGTCGGGGCAATTTCAAGAAACCCTGCAACATCCTCTGGCTTTAACA
CAAAAAGACTTTACGCTTTTGCTCAATTGCCTGATGGACGTTAACTTTAATGTTCCCTTAGAAGAGATTACTTCTTCCAT
TCACCTAGCCGATTATTATGAACTGGCAGAAGTGGTGAAAAATTTAGAAGAACAGCTGATTGATGGATACAAATTACAAA
GATTTGAACCCTTTAACTCCACTGAAGAAAGTTTAGTCAGATTAAAAGAGATTTTAAGTTTCGCGCGTCGCTGTCAATTA
AATAGATTGAAGAACTATTTAGAATTCACTGTTGTGAGCGCCTTATTAAACCAGACCTCTCAGTTAGCCGAGTTTAAAAG
AATTATAAATCACTTCTTAAAGAAGATAGAAACACTCAATTTTTCAGACAATGCTTATTTAACAGATGCCCATCTTTTAG
CATTAAAAGATTGTGAAAATTTAAAAGTACTTCATTGTAAGAAATGTTGGGGTGTCACTGATGCAGGATTAGCGCATTTG
ACACCTTTAACAGCTTTGCAACGTCTAGATCTGAGCTATTGCGAGAATCTCACGGATGATGGATTAGCCCATTTGACGCC
CTTAACAGCTTTGCAACACCTAGATCTGAGCTATTGTGAGAATCTCACGGATGATGGATTAGCCCATTTAGCACCTTTAA
AGGCTTTGCAGCGTCTAGCTCTAACTAACTGTAAAAATCTCACCGATGCAGGATTAACCCATTTGACAACTTTAACGGCT
TTGCAGCATCTAGATTTAAGCCAATACTGGAAACTCACCGATGCGGGATTAGCGCATTTGAAACCTTTAACGGCTTTGCA
GCATCTAGATCTAAGTCTATGCTATTATCTCACTGACGCTGGAATAGCGCATTTAAAACCCTTAACGGCTTTGCAGCATC
TAGATTTAAGTCAATATAGAAATCTCACGGATGCTGGATTAGCCCATTTGACGCCTTTAATGGGTTTGCAGTATCTAAAT
CTGAGTGCGTGCAAGAATCTCACGGATGCTGGATTAGCCCATTTGGCACCCTTAACCGCTTTGCAACATCTAAATCTAAG
TAGTTGCTATAATCTCACCGATGCCGGATTAGTCCATTTGATACCCTTAACGGCTTTGCAGCATCTATATCTAAGCGATT
GGGAGAATCTCACGGATACTGGATTAGCTCATTTGGCACCTTTAACAGCTTTGCAGCATCTCAATCTAAGCAACTGTAGG
AAACTCACTGATGATGGATTAGCGCATTTAAAATCTTTGGTGACTTTGACGCATTTAGATCTAAGTTGGTGCAAAAATTT
CACTGATGAGGGATTAACCCATTTGACACCCTTAACGGGTTTGCAATATCTAGTTCTAAGCCTATGCTATCATCTCACTG
ACGATGGATTAGCACGTTTTAAAACTTTAGCAGTTTCACACAATTTAAAAATTATTAAATAG

Upstream 100 bases:

>100_bases
GGTCATTTTGAATATTTCTAATTTTGGGTTTAATCCTAGTCAACTTGTCCCTACAACGACTCCATCTTACTCCCCTCTTC
AAGAGATTAGTGATCCTCTT

Downstream 100 bases:

>100_bases
AAAAAACTTTCAATAAAAAGAGAAACCAGGCGGCGAAAATAAAAGCGTACTTTGTCCTAAGTAGATAAAAGATAAAATTT
CATTAAATTTGATCAATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT
QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL
NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL
TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA
LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN
LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR
KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK

Sequences:

>Translated_553_residues
MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT
QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL
NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL
TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA
LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN
LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR
KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK
>Mature_553_residues
MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLYFKNLWSGQFQETLQHPLALT
QKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVKNLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQL
NRLKNYLEFTVVSALLNQTSQLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL
TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTA
LQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLN
LSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR
KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI22748931, Length=323, Percent_Identity=34.6749226006192, Blast_Score=143, Evalue=4e-34,
Organism=Homo sapiens, GI27734755, Length=432, Percent_Identity=28.9351851851852, Blast_Score=116, Evalue=6e-26,
Organism=Homo sapiens, GI161333852, Length=398, Percent_Identity=26.1306532663317, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI161333854, Length=395, Percent_Identity=26.0759493670886, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI284447308, Length=439, Percent_Identity=27.3348519362187, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI6912466, Length=281, Percent_Identity=31.3167259786477, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI296531375, Length=414, Percent_Identity=27.2946859903382, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI284447314, Length=240, Percent_Identity=33.75, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI289666746, Length=262, Percent_Identity=34.3511450381679, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI25151694, Length=307, Percent_Identity=29.9674267100977, Blast_Score=92, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI25151696, Length=307, Percent_Identity=29.9674267100977, Blast_Score=92, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6322549, Length=361, Percent_Identity=28.808864265928, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17647819, Length=303, Percent_Identity=34.3234323432343, Blast_Score=134, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24662818, Length=236, Percent_Identity=35.1694915254237, Blast_Score=90, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21357913, Length=253, Percent_Identity=32.4110671936759, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI161076547, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24652783, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI161076545, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI161076549, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24646754, Length=277, Percent_Identity=30.3249097472924, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61872; Mature: 61872

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLY
CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHEEEEECCCEEEEEHHHHHHHHHHHHH
FKNLWSGQFQETLQHPLALTQKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVK
HHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQLNRLKNYLEFTVVSALLNQTS
HHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL
HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCEEEEHHHCCCCCCCHHHH
TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLA
HHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHH
LTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDA
HHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTA
CHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH
LQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR
HHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHH
KTLAVSHNLKIIK
HHHHHCCCCEEEC
>Mature Secondary Structure
MDENTPLDNPLPNLEETSASTIQPSALSPLSEELQLNFHEGTSLTISHSQLALLREKSLY
CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHEEEEECCCEEEEEHHHHHHHHHHHHH
FKNLWSGQFQETLQHPLALTQKDFTLLLNCLMDVNFNVPLEEITSSIHLADYYELAEVVK
HHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NLEEQLIDGYKLQRFEPFNSTEESLVRLKEILSFARRCQLNRLKNYLEFTVVSALLNQTS
HHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAEFKRIINHFLKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL
HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCCEEEEHHHCCCCCCCHHHH
TPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLA
HHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHH
LTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDA
HHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTA
CHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH
LQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCR
HHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
KLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHH
KTLAVSHNLKIIK
HHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA