Click here to switch to the map view.

The map label for this gene is rcsF [H]

Identifier: 46446553

GI number: 46446553

Start: 1113295

End: 1114119

Strand: Reverse

Name: rcsF [H]

Synonym: pc0919

Alternate gene names: 46446553

Gene position: 1114119-1113295 (Counterclockwise)

Preceding gene: 46446558

Following gene: 46446552

Centisome position: 46.14

GC content: 36.97

Gene sequence:

>825_bases
ATGTTAGACGACAAAACACAATTTTTCATGAAGCCTATTGGTTATTTTCGAGCTGAGCAAATAAAAAAATATCAAGTTCC
TAGACAAGCGCCTCTTTCTGACAGCGAAGGGCTTATTGAATTACTTCCCCAGGTTCAATTTGAACAGGCCCTTACAGGTT
TGGAAGGATTTGAAAGAATATGGATATTATTTCGATTTCATTTACATACCCATTGGAAACCAAAAGTACTCCCTCCAAGA
GGAGAGAAAAAACAAGGTGTTTTTGCAACGCGTTCTCCTCATCGCCCTAATTTAATAGGACTTTCTTGCGTCAAATTGAA
AAAGATTTGCGGATTAAAACTTTATATTGTCAACCATGATTTGCTAGAAGGAACTCCTATTCTAGATATCAAGCCTTATC
TTAACTATGCCGATTCTTTTCAATGCCAAAAACAGGGGTGGTTGGATGACCTTACTGCTGCTGACGAGGTATTTTCTATC
CAATGGTCATCACAAGTTCTCGAACAGCTCCAATATCTAGAAAAAGAGTGGGATTGCTTTCTGCAAGCGAAGATCACATT
GCGTTTACAAGTAAATCCTTTTCCTTCTTCCAATAATCGTATTAAACTTATTAAAGGTAACAATTATCAACTCGCTTATC
AAACATGGCGGGTCAATTATTCAATTGATAATTCCATCCTTCTTGTTTTTTCTCTTATCACAGGATATGACAAAGAAACA
TTAAGAGGGAATAGGTCTTCTCGATGGGAAGATGTTCCTATACATCAAGCTTTTATACAAAGATTTGGGGGAATGAATAG
CTGTGATAGCGAGGTTGCAACTTAA

Upstream 100 bases:

>100_bases
GCAAAATAGTAAAAATTCAATAGAAATCAAAAATTGATTCCTTTTAACAATGAATATGTGAAAATTAATACCAATTTTCT
CCGTTTATTTGAAGGAAACA

Downstream 100 bases:

>100_bases
CAAAGATAGCCCATCCTTTGCGATTGCTTTGTTAAAACAAGATTTCCCTCTTTTAATTTCATTTGAATTCATCAATCCCT
TTAACTTCCTTAATTTTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MLDDKTQFFMKPIGYFRAEQIKKYQVPRQAPLSDSEGLIELLPQVQFEQALTGLEGFERIWILFRFHLHTHWKPKVLPPR
GEKKQGVFATRSPHRPNLIGLSCVKLKKICGLKLYIVNHDLLEGTPILDIKPYLNYADSFQCQKQGWLDDLTAADEVFSI
QWSSQVLEQLQYLEKEWDCFLQAKITLRLQVNPFPSSNNRIKLIKGNNYQLAYQTWRVNYSIDNSILLVFSLITGYDKET
LRGNRSSRWEDVPIHQAFIQRFGGMNSCDSEVAT

Sequences:

>Translated_274_residues
MLDDKTQFFMKPIGYFRAEQIKKYQVPRQAPLSDSEGLIELLPQVQFEQALTGLEGFERIWILFRFHLHTHWKPKVLPPR
GEKKQGVFATRSPHRPNLIGLSCVKLKKICGLKLYIVNHDLLEGTPILDIKPYLNYADSFQCQKQGWLDDLTAADEVFSI
QWSSQVLEQLQYLEKEWDCFLQAKITLRLQVNPFPSSNNRIKLIKGNNYQLAYQTWRVNYSIDNSILLVFSLITGYDKET
LRGNRSSRWEDVPIHQAFIQRFGGMNSCDSEVAT
>Mature_274_residues
MLDDKTQFFMKPIGYFRAEQIKKYQVPRQAPLSDSEGLIELLPQVQFEQALTGLEGFERIWILFRFHLHTHWKPKVLPPR
GEKKQGVFATRSPHRPNLIGLSCVKLKKICGLKLYIVNHDLLEGTPILDIKPYLNYADSFQCQKQGWLDDLTAADEVFSI
QWSSQVLEQLQYLEKEWDCFLQAKITLRLQVNPFPSSNNRIKLIKGNNYQLAYQTWRVNYSIDNSILLVFSLITGYDKET
LRGNRSSRWEDVPIHQAFIQRFGGMNSCDSEVAT

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=250, Percent_Identity=30.8, Blast_Score=111, Evalue=8e-25,
Organism=Escherichia coli, GI1786393, Length=236, Percent_Identity=33.8983050847458, Blast_Score=120, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586408, Length=134, Percent_Identity=44.0298507462687, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI45552503, Length=134, Percent_Identity=44.0298507462687, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 31886; Mature: 31886

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDKTQFFMKPIGYFRAEQIKKYQVPRQAPLSDSEGLIELLPQVQFEQALTGLEGFERI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WILFRFHLHTHWKPKVLPPRGEKKQGVFATRSPHRPNLIGLSCVKLKKICGLKLYIVNHD
HHHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCEEEEEEECH
LLEGTPILDIKPYLNYADSFQCQKQGWLDDLTAADEVFSIQWSSQVLEQLQYLEKEWDCF
HHCCCCEEEEHHHCCCCCCCHHHHCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHCEE
LQAKITLRLQVNPFPSSNNRIKLIKGNNYQLAYQTWRVNYSIDNSILLVFSLITGYDKET
EEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHCCCHHH
LRGNRSSRWEDVPIHQAFIQRFGGMNSCDSEVAT
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure
MLDDKTQFFMKPIGYFRAEQIKKYQVPRQAPLSDSEGLIELLPQVQFEQALTGLEGFERI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WILFRFHLHTHWKPKVLPPRGEKKQGVFATRSPHRPNLIGLSCVKLKKICGLKLYIVNHD
HHHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCEEEEEEECH
LLEGTPILDIKPYLNYADSFQCQKQGWLDDLTAADEVFSIQWSSQVLEQLQYLEKEWDCF
HHCCCCEEEEHHHCCCCCCCHHHHCCCCHHHHHHHHEEEEEHHHHHHHHHHHHHHHHCEE
LQAKITLRLQVNPFPSSNNRIKLIKGNNYQLAYQTWRVNYSIDNSILLVFSLITGYDKET
EEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHCCCHHH
LRGNRSSRWEDVPIHQAFIQRFGGMNSCDSEVAT
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]