Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446539

Identifier: 46446539

GI number: 46446539

Start: 1095457

End: 1097106

Strand: Reverse

Name: 46446539

Synonym: pc0905

Alternate gene names: NA

Gene position: 1097106-1095457 (Counterclockwise)

Preceding gene: 46446541

Following gene: 46446537

Centisome position: 45.44

GC content: 35.21

Gene sequence:

>1650_bases
ATGATACCCAGCGCATCACTATCAAACTTAGAAAATTTTAGTTTTACAGCATATTTTACAAAACAAATGGCGAATGTTAA
CCATTCATTTGTATTAGGTTCTGTTAGTTCTCGAATTGTTGGTTTTGTTGCCATCCCATTTACATCTTTAGCAGATGCTT
TCGCGCACGCCTGTTTGACAGCAAGTAAATTTGCAACCGGAATAGTCATTTCTCCCTATAATATTACAGCTAGCTTGTTT
TTTCCGGATAAAGCCGCACCAACAGATTTAGAATTATCCTCTGCTTTAATTCACTTGATAAGAGTCGTTGAATGTGTCGT
GACTGGAATTTTGCTTCCATTTGTTTGTTTATTAAATCCTGAGCGTGCTAAACAATTCATGAGTCAAAGGCTCCCTAAAA
ATGAAAAATCAGCTCAGCCATTTTCAAGGCTATCTCGACACTCTTCGTATAAGGAATATTGGCCTGAAACAACAACCGTA
AAAAAGAATAAATTAGATTCAACTCCTGGTTTTATGCCACCTAATCTGGTTACTGAAAAGCCTGCAGTAAATTCGCAAGC
ACAAGCTTCCAGTTCAGGAACAACGCCATTCAGAGCTTCTGTGAAATCGCAACCTACTGTTTCAACATCTCAGAGCAGCA
CTCCATTTATTCCACCCGCACCACCTGTAGTTGGACCACCACCGCCTCCTCCTCTTCCTTCTCTTTTTTCTTCTTCTCAG
ATTTCCGTATCGACTCTGCAAGCGACAGCAAATAAACTTTCAAAGTCAACTCCCATTGATGGCATTAGCATTAATAAACG
TTCTCCTAAGCAAACTCCACCTGTTCAAATTTCACTCATAGAATCACTTAAAGTAGCTATAAAAAAGAATGGTAAAAAAG
GAAAAACAAAATTTTCAACAACACCTCCCTTAAGCCCTTCAAGAATAAATGCTGCAAGACCCCCATTTACTAAACCAAAT
CCAGCAAATATTTTAAATCCCCATTTATTACTACTTAATGATACTAATCCCCATGTGCCAAGAAGATTGAAAGAGCAAAT
TTCTATGGTTTTAGATATATCGACGTTTAAATTAAAAGAATATGATGATTGTGAATTGGTGCAAACCTTGAAAAAAGATG
TCCTATGGAAAGATTATCTGGAAAGCTCAGATGAAGAGGATAATAAAATTGAAACTCTTGTATCTTATTTTCAAGAACTG
GAAAGTTTAAATGATAGAAAACGTGAAGCTGCTGCAAAACTAAGAAAATCCGCCTCTGCTATAATCACAACAAGAAGTCC
TACAAAAACAAAAGGTATAACTCCGGCAGGAGCAACTAAAAAACCAGTCACGCCAAGTAAAAATTGCAAGCTGGAAAAAC
TTAAAATTGAAACGTTAAATCAATTAAGATTCAAAGATGGTACTTACAACTGCCCAGTTTTAGTTGGTAGGAAATTAGCT
ACTGTAAATTTCAACATTGCTAAACATAACAATGAGATGTCCAGAAATATAATAAAACTTATAAATTATCAAGATTTTAC
TAAACGACACGAAGCTTTAGTTAAAAAAATAATAGGGGCCAATTCTGAATCTATATTGGAAAGTGTTGCTATGAAAAATG
AAATTGGTTTAATTATTCTAGTTGTAAATGAAATTAAAGATCTTCGATAA

Upstream 100 bases:

>100_bases
TTTCATTTTAGTTTTATAAATAATAATTGTAAAATTGATCTAAATCATCATATCACATGTTTTATACAGAAATGATGAAA
ATTTCTTAGAAGGTAATTTA

Downstream 100 bases:

>100_bases
CATTTTATTCTATAGGCCATGTTTTAATTAATATCGCCTATAGGCAAGTTTAAATTTTATTTCTCTATAAAATTATCAAT
ATTGACAAAGGAATGTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 549; Mature: 549

Protein sequence:

>549_residues
MIPSASLSNLENFSFTAYFTKQMANVNHSFVLGSVSSRIVGFVAIPFTSLADAFAHACLTASKFATGIVISPYNITASLF
FPDKAAPTDLELSSALIHLIRVVECVVTGILLPFVCLLNPERAKQFMSQRLPKNEKSAQPFSRLSRHSSYKEYWPETTTV
KKNKLDSTPGFMPPNLVTEKPAVNSQAQASSSGTTPFRASVKSQPTVSTSQSSTPFIPPAPPVVGPPPPPPLPSLFSSSQ
ISVSTLQATANKLSKSTPIDGISINKRSPKQTPPVQISLIESLKVAIKKNGKKGKTKFSTTPPLSPSRINAARPPFTKPN
PANILNPHLLLLNDTNPHVPRRLKEQISMVLDISTFKLKEYDDCELVQTLKKDVLWKDYLESSDEEDNKIETLVSYFQEL
ESLNDRKREAAAKLRKSASAIITTRSPTKTKGITPAGATKKPVTPSKNCKLEKLKIETLNQLRFKDGTYNCPVLVGRKLA
TVNFNIAKHNNEMSRNIIKLINYQDFTKRHEALVKKIIGANSESILESVAMKNEIGLIILVVNEIKDLR

Sequences:

>Translated_549_residues
MIPSASLSNLENFSFTAYFTKQMANVNHSFVLGSVSSRIVGFVAIPFTSLADAFAHACLTASKFATGIVISPYNITASLF
FPDKAAPTDLELSSALIHLIRVVECVVTGILLPFVCLLNPERAKQFMSQRLPKNEKSAQPFSRLSRHSSYKEYWPETTTV
KKNKLDSTPGFMPPNLVTEKPAVNSQAQASSSGTTPFRASVKSQPTVSTSQSSTPFIPPAPPVVGPPPPPPLPSLFSSSQ
ISVSTLQATANKLSKSTPIDGISINKRSPKQTPPVQISLIESLKVAIKKNGKKGKTKFSTTPPLSPSRINAARPPFTKPN
PANILNPHLLLLNDTNPHVPRRLKEQISMVLDISTFKLKEYDDCELVQTLKKDVLWKDYLESSDEEDNKIETLVSYFQEL
ESLNDRKREAAAKLRKSASAIITTRSPTKTKGITPAGATKKPVTPSKNCKLEKLKIETLNQLRFKDGTYNCPVLVGRKLA
TVNFNIAKHNNEMSRNIIKLINYQDFTKRHEALVKKIIGANSESILESVAMKNEIGLIILVVNEIKDLR
>Mature_549_residues
MIPSASLSNLENFSFTAYFTKQMANVNHSFVLGSVSSRIVGFVAIPFTSLADAFAHACLTASKFATGIVISPYNITASLF
FPDKAAPTDLELSSALIHLIRVVECVVTGILLPFVCLLNPERAKQFMSQRLPKNEKSAQPFSRLSRHSSYKEYWPETTTV
KKNKLDSTPGFMPPNLVTEKPAVNSQAQASSSGTTPFRASVKSQPTVSTSQSSTPFIPPAPPVVGPPPPPPLPSLFSSSQ
ISVSTLQATANKLSKSTPIDGISINKRSPKQTPPVQISLIESLKVAIKKNGKKGKTKFSTTPPLSPSRINAARPPFTKPN
PANILNPHLLLLNDTNPHVPRRLKEQISMVLDISTFKLKEYDDCELVQTLKKDVLWKDYLESSDEEDNKIETLVSYFQEL
ESLNDRKREAAAKLRKSASAIITTRSPTKTKGITPAGATKKPVTPSKNCKLEKLKIETLNQLRFKDGTYNCPVLVGRKLA
TVNFNIAKHNNEMSRNIIKLINYQDFTKRHEALVKKIIGANSESILESVAMKNEIGLIILVVNEIKDLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60403; Mature: 60403

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPSASLSNLENFSFTAYFTKQMANVNHSFVLGSVSSRIVGFVAIPFTSLADAFAHACLT
CCCCCCHHCCCCCEEHHHHHHHHHCCCCCEEEECHHHHHHEEEEHHHHHHHHHHHHHHHH
ASKFATGIVISPYNITASLFFPDKAAPTDLELSSALIHLIRVVECVVTGILLPFVCLLNP
HHHHHCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ERAKQFMSQRLPKNEKSAQPFSRLSRHSSYKEYWPETTTVKKNKLDSTPGFMPPNLVTEK
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCC
PAVNSQAQASSSGTTPFRASVKSQPTVSTSQSSTPFIPPAPPVVGPPPPPPLPSLFSSSQ
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
ISVSTLQATANKLSKSTPIDGISINKRSPKQTPPVQISLIESLKVAIKKNGKKGKTKFST
CCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCC
TPPLSPSRINAARPPFTKPNPANILNPHLLLLNDTNPHVPRRLKEQISMVLDISTFKLKE
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHEECCC
YDDCELVQTLKKDVLWKDYLESSDEEDNKIETLVSYFQELESLNDRKREAAAKLRKSASA
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IITTRSPTKTKGITPAGATKKPVTPSKNCKLEKLKIETLNQLRFKDGTYNCPVLVGRKLA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEECCEEE
TVNFNIAKHNNEMSRNIIKLINYQDFTKRHEALVKKIIGANSESILESVAMKNEIGLIIL
EEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
VVNEIKDLR
EEHHHCCCC
>Mature Secondary Structure
MIPSASLSNLENFSFTAYFTKQMANVNHSFVLGSVSSRIVGFVAIPFTSLADAFAHACLT
CCCCCCHHCCCCCEEHHHHHHHHHCCCCCEEEECHHHHHHEEEEHHHHHHHHHHHHHHHH
ASKFATGIVISPYNITASLFFPDKAAPTDLELSSALIHLIRVVECVVTGILLPFVCLLNP
HHHHHCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ERAKQFMSQRLPKNEKSAQPFSRLSRHSSYKEYWPETTTVKKNKLDSTPGFMPPNLVTEK
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCC
PAVNSQAQASSSGTTPFRASVKSQPTVSTSQSSTPFIPPAPPVVGPPPPPPLPSLFSSSQ
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
ISVSTLQATANKLSKSTPIDGISINKRSPKQTPPVQISLIESLKVAIKKNGKKGKTKFST
CCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCC
TPPLSPSRINAARPPFTKPNPANILNPHLLLLNDTNPHVPRRLKEQISMVLDISTFKLKE
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHEECCC
YDDCELVQTLKKDVLWKDYLESSDEEDNKIETLVSYFQELESLNDRKREAAAKLRKSASA
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IITTRSPTKTKGITPAGATKKPVTPSKNCKLEKLKIETLNQLRFKDGTYNCPVLVGRKLA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEECCEEE
TVNFNIAKHNNEMSRNIIKLINYQDFTKRHEALVKKIIGANSESILESVAMKNEIGLIIL
EEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
VVNEIKDLR
EEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA