| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446537
Identifier: 46446537
GI number: 46446537
Start: 1093491
End: 1094006
Strand: Reverse
Name: 46446537
Synonym: pc0903
Alternate gene names: NA
Gene position: 1094006-1093491 (Counterclockwise)
Preceding gene: 46446539
Following gene: 46446536
Centisome position: 45.31
GC content: 44.96
Gene sequence:
>516_bases ATGCTTAAATGTGCTACTCTTCTAAGCTCATCAATGGAGCATCTTATGGAAGCGCACAGAAGACATGATATATCCGACAG AGTTTGGAATTTACTGGGACCTCATTTGCCAGGAAGAAGAGGGACTTGGGGTGGTATAGCAAGAGATAATAGGACTTTTA TCAATGCAGTATTTTGGATATTAAGAACGGGAGCTCCATGGAGGGATTTGCCTCCAGATTACGGTTGTTGGAGCAATACT CATCGGCGATTTATCCGATGGCGCAATCAGAGAGTCTGGGAAAGGTTGCTTGAGGTGCTGATTGACGATCCAGATTATGA ATGGCTTGTGATAGATGCTTCGCATTGTAAAGTGCATCCTCATGCAGCGGGAGCTAAAGGTGGTAATCAGAGCATGAGTC GTACAAAAGGGGGCTCAATACAAAATTGCATCTTGCCGTGGATGCGCATGGTCTGCCGATCAGGGTCATTATTACAGAAG GCACAACAGCAGATTGTACTCAAGCAAGCAATTTGA
Upstream 100 bases:
>100_bases ATTTGCTTATTAAAGCCAAATCGCTCTTATATTAACTTTGCCGACAATACCTAAATGAGAATGCAAACCCTAGATAGTGT AGTCACGAGAAATGAAATAA
Downstream 100 bases:
>100_bases TCGCTGGTCTTACAGCTGAGTGGTTACTGGCAGACAAAGGATATGATAGCGACGCAATCGTTGAGCAAGCTATAAGTCAG GGAATGCAAGTAGTGATTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MLKCATLLSSSMEHLMEAHRRHDISDRVWNLLGPHLPGRRGTWGGIARDNRTFINAVFWILRTGAPWRDLPPDYGCWSNT HRRFIRWRNQRVWERLLEVLIDDPDYEWLVIDASHCKVHPHAAGAKGGNQSMSRTKGGSIQNCILPWMRMVCRSGSLLQK AQQQIVLKQAI
Sequences:
>Translated_171_residues MLKCATLLSSSMEHLMEAHRRHDISDRVWNLLGPHLPGRRGTWGGIARDNRTFINAVFWILRTGAPWRDLPPDYGCWSNT HRRFIRWRNQRVWERLLEVLIDDPDYEWLVIDASHCKVHPHAAGAKGGNQSMSRTKGGSIQNCILPWMRMVCRSGSLLQK AQQQIVLKQAI >Mature_171_residues MLKCATLLSSSMEHLMEAHRRHDISDRVWNLLGPHLPGRRGTWGGIARDNRTFINAVFWILRTGAPWRDLPPDYGCWSNT HRRFIRWRNQRVWERLLEVLIDDPDYEWLVIDASHCKVHPHAAGAKGGNQSMSRTKGGSIQNCILPWMRMVCRSGSLLQK AQQQIVLKQAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To transposase of insertion sequence IS6501 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19774; Mature: 19774
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKCATLLSSSMEHLMEAHRRHDISDRVWNLLGPHLPGRRGTWGGIARDNRTFINAVFWI CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH LRTGAPWRDLPPDYGCWSNTHRRFIRWRNQRVWERLLEVLIDDPDYEWLVIDASHCKVHP HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECC HAAGAKGGNQSMSRTKGGSIQNCILPWMRMVCRSGSLLQKAQQQIVLKQAI CCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLKCATLLSSSMEHLMEAHRRHDISDRVWNLLGPHLPGRRGTWGGIARDNRTFINAVFWI CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH LRTGAPWRDLPPDYGCWSNTHRRFIRWRNQRVWERLLEVLIDDPDYEWLVIDASHCKVHP HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECC HAAGAKGGNQSMSRTKGGSIQNCILPWMRMVCRSGSLLQKAQQQIVLKQAI CCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424; 8190622 [H]