Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

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The map label for this gene is 46446368

Identifier: 46446368

GI number: 46446368

Start: 894351

End: 897197

Strand: Reverse

Name: 46446368

Synonym: pc0734

Alternate gene names: NA

Gene position: 897197-894351 (Counterclockwise)

Preceding gene: 46446370

Following gene: 46446367

Centisome position: 37.16

GC content: 33.93

Gene sequence:

>2847_bases
ATGCTGCTTTCCTCTAGCATAGATTCTAATATTAATTCTAAGATTTTTGTAGATAACAAACAAAATCCCTCATTCCCTTC
TCCTTTAGCTATAAAAATTGGGTTAGAAATATTCAAATATTTGGAATCGCTAGATCAAAAGCAAACTAGGCTAGTGTGTA
GGAAATGGAAGCAGCTAATCGATAAAGTACATATTGTTGAAAGATATAATATAAGGCTTATGAATGGGGCCGAGGTGAGA
CAAGAAGCTACTAATTGCTTAAGCAAATATAAAAAATTAAAAATAGAACAGCGCTTTTTTTTAATGATTGTCAAACTTTC
GAAAGATTGCATAAAAATAAAGGTCGCAGCTGCAAATGCCTTGATGATTTTAAAAAAAACCAATTTTTCTTTTGTCGGCT
CTGATTTTAGAGGGATTCAAGCCCCTGGTGTTAGGCTTGCCCGGGCAAATTTGAATAAAGCTAATTTCTCGGGAGCGAAT
CTAGAAGGGGCGGATTTTACTGGCTGCTCCTTAGAAAACGTTATTCTTGATGGCGCGGAGCTTAAAGACGTCCAGTTTGG
CCAGCTCCCTTATTTAAATCATCTAAGCAATATACTCGCTATGGCTGTGTCTCCTGATGGCAAGCATTTGGCTTCCGTTG
ATTGGGACAGTTTCTATATTTGGAATTTGGAAACTTTTGAAGCTCAAACGCAAATATTGGCGACAAGAGTTAATCCAAAG
TCGGCGTTCCCTAAGTACAATTTTCTCCAGTTTTTTCAGAATGGCCAATTTCTTTTCAGAGCATCGTGCATGGAAAAAGA
TAAATTGCTTCGTAAAAGGGATGGGAAAATTGAAATATGGAAAACTAATCCTCTAACAATGATCAATTCACTGCTTATTG
AAAATATTGAATTTTTTTCCTTATTGGCTCTTACTCAAGATGAAAAAATGCTTATTACTGTAGGCATAAAAGACCAGTTT
TCTCCTATGCCAAAAATAGAAATTTGCCTTTGGCAAATAAATTTTAATACCCTCCATATTCCTCAACTTCAACCAAAGCC
AGTCAAAAAAAAAATAATAATGGGCTTCTCGGTAATTGCTAGCCGCTATGCCCCTAAAAATTCTATTATCGCTATTCTTG
TAATAGAACATGCGAGAGAATGCTTAAGAGGAGAATGTGTCAAATTTTATACCCTCCCTGATTTAGAAGAAGTAAAACAA
GGTTTGGTATTTCAGCTATCTGAAAAGAAGAAAATAGCGCCAGGCAATATAATGTTCTATGATATGATATTTACTCCGCA
AGAAAGCCATTTTGTCATAATAAATAGGGCTATAGCTGGGGAAAGTAAAAGTGAAGTACATAGTTGGAGTACAAAAAATA
ATCAAAAAAAATTTTTATTTTTTGAAGAAGGTACTATAACCCACCTCCAATTTTTGTCAGATAACTCACAAATGGCCTAC
TTTATAACTAGCGGGCGTCATGGTATAACCTTTTTTCGCATACGTGACAAAGATTTCAAATTAAAGTTCAGCGAACGGTT
AAGCTTAAAGAATTCTGATGATTGCGATAATTATAAAGATACACTACACTTTATTTCTAATGGTCAGTTTGTCTTCCAGT
CTAAAATAAAACAAATTTCTATTGCTTCTTTAAAAGCTTTTGTGGGCAAAAAAGAATTTCCTCTATCTCTTCGTGATATG
TATTTTTCCCCAGATGAGCAAAAAGTCTTTCTCTGGAGTTATGAACACCGAAATACTTACTGGCCTAATCTAGAAAACAC
CTACATTCTTCATAAAGTTGAAAATAAGCTCTATACCTATCAAACTTTTAATGGGAAAAAACTTAGAAACAAAAAATTAC
CGAAGCCTTTTTCTGCACCGAGATGGTTCGAGGATTGGGGTTGCCGTCTCTCTTCTAATGCCCAATATTGTATTCGAACA
TGCCCCTCCGAAAGCAATGGCAAAAACAAAATTACTATTTCTCAAGTTGAAAATGAAAAAGTACAAGCTTCATATGCAGG
ATCTTTTTTAACTTATTCATTATCAAAAGATAATCGTTATCTTGTCTTTATTTACCAAAACCAATTCAAGCTAATTGAAA
TAGATTTCGAAAAACATAATCAATTAGTGGACATGGATTCCACGCAACAAAAACTTGCTGTTTCTCTTCCTTGTCTTTTG
GGCAAAGAAAAAATTAAATATACTCTTTCTGATCATGTTTTTCCCGTCACAACTCTTGCTTTAAGCAATATTGAAACAGG
ACAAATCAGCATATGGGAGATTAATTGGGAAGCCAAACAAGTACAAGAGGTGTTTCAGTGTTTAACGAAATTGTTTTCCA
CTGAATTTTGCTTGTATGGTCAATCCAACTTTTATTTTCAACAATCCAAGTTCTATTTTCAAGAGAATGAACAAGCTCTT
GTTGTATGGGACAAAAAAACGCATAGTAAGCAAACCATCAAGTCAAAAACTCAGTTCATTGATTTTGTTACATCCCACGA
TGGGGTCTGGATGGTAACTATTGAAAAAATAGTAATTTCAATGCATAAGGGAAAATTTTTCGAAGATAAATCCAGGTTTT
GCTTAGTAAATTTAGATCAAAGGAAAAGACTTGATCACTTCATCCTTCCTTTTGGTCGTTCAATAATCCGACTTTCACCA
CAAGGTAAGTTTTTAATTGTTAACCATATGAGTGATTTTGAAGAATTAAGTATATGGAAAATAAAGAAAGGAAAATTTCA
ACTTTTATGGAAGACTCCTCATTATTTAAACGTAAGGGGATTGAGTTTAAAGAATACACAAAATTTGGATGTAAAAAATA
CTTTATTGCTTTATGGGCTTAAAAATCGGGTTTCAGAAGAACTCTAA

Upstream 100 bases:

>100_bases
ATCAAATAAAAAAAATGAATTGCTTTATTTTAGTATAGTTTACTACCCCACAATAGTTGAATAAATCTTTTCCCATCCCT
CTTTTTAGGAGAATTATACG

Downstream 100 bases:

>100_bases
TAGAGGAAATCATAAAGTATATCATTAGTTAATTCCCTTTAGAGACCTGTTTCTTTTTCTATGGTTAGCATTAAGTTAAA
GAATGAATGCCCTTTCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 948; Mature: 948

Protein sequence:

>948_residues
MLLSSSIDSNINSKIFVDNKQNPSFPSPLAIKIGLEIFKYLESLDQKQTRLVCRKWKQLIDKVHIVERYNIRLMNGAEVR
QEATNCLSKYKKLKIEQRFFLMIVKLSKDCIKIKVAAANALMILKKTNFSFVGSDFRGIQAPGVRLARANLNKANFSGAN
LEGADFTGCSLENVILDGAELKDVQFGQLPYLNHLSNILAMAVSPDGKHLASVDWDSFYIWNLETFEAQTQILATRVNPK
SAFPKYNFLQFFQNGQFLFRASCMEKDKLLRKRDGKIEIWKTNPLTMINSLLIENIEFFSLLALTQDEKMLITVGIKDQF
SPMPKIEICLWQINFNTLHIPQLQPKPVKKKIIMGFSVIASRYAPKNSIIAILVIEHARECLRGECVKFYTLPDLEEVKQ
GLVFQLSEKKKIAPGNIMFYDMIFTPQESHFVIINRAIAGESKSEVHSWSTKNNQKKFLFFEEGTITHLQFLSDNSQMAY
FITSGRHGITFFRIRDKDFKLKFSERLSLKNSDDCDNYKDTLHFISNGQFVFQSKIKQISIASLKAFVGKKEFPLSLRDM
YFSPDEQKVFLWSYEHRNTYWPNLENTYILHKVENKLYTYQTFNGKKLRNKKLPKPFSAPRWFEDWGCRLSSNAQYCIRT
CPSESNGKNKITISQVENEKVQASYAGSFLTYSLSKDNRYLVFIYQNQFKLIEIDFEKHNQLVDMDSTQQKLAVSLPCLL
GKEKIKYTLSDHVFPVTTLALSNIETGQISIWEINWEAKQVQEVFQCLTKLFSTEFCLYGQSNFYFQQSKFYFQENEQAL
VVWDKKTHSKQTIKSKTQFIDFVTSHDGVWMVTIEKIVISMHKGKFFEDKSRFCLVNLDQRKRLDHFILPFGRSIIRLSP
QGKFLIVNHMSDFEELSIWKIKKGKFQLLWKTPHYLNVRGLSLKNTQNLDVKNTLLLYGLKNRVSEEL

Sequences:

>Translated_948_residues
MLLSSSIDSNINSKIFVDNKQNPSFPSPLAIKIGLEIFKYLESLDQKQTRLVCRKWKQLIDKVHIVERYNIRLMNGAEVR
QEATNCLSKYKKLKIEQRFFLMIVKLSKDCIKIKVAAANALMILKKTNFSFVGSDFRGIQAPGVRLARANLNKANFSGAN
LEGADFTGCSLENVILDGAELKDVQFGQLPYLNHLSNILAMAVSPDGKHLASVDWDSFYIWNLETFEAQTQILATRVNPK
SAFPKYNFLQFFQNGQFLFRASCMEKDKLLRKRDGKIEIWKTNPLTMINSLLIENIEFFSLLALTQDEKMLITVGIKDQF
SPMPKIEICLWQINFNTLHIPQLQPKPVKKKIIMGFSVIASRYAPKNSIIAILVIEHARECLRGECVKFYTLPDLEEVKQ
GLVFQLSEKKKIAPGNIMFYDMIFTPQESHFVIINRAIAGESKSEVHSWSTKNNQKKFLFFEEGTITHLQFLSDNSQMAY
FITSGRHGITFFRIRDKDFKLKFSERLSLKNSDDCDNYKDTLHFISNGQFVFQSKIKQISIASLKAFVGKKEFPLSLRDM
YFSPDEQKVFLWSYEHRNTYWPNLENTYILHKVENKLYTYQTFNGKKLRNKKLPKPFSAPRWFEDWGCRLSSNAQYCIRT
CPSESNGKNKITISQVENEKVQASYAGSFLTYSLSKDNRYLVFIYQNQFKLIEIDFEKHNQLVDMDSTQQKLAVSLPCLL
GKEKIKYTLSDHVFPVTTLALSNIETGQISIWEINWEAKQVQEVFQCLTKLFSTEFCLYGQSNFYFQQSKFYFQENEQAL
VVWDKKTHSKQTIKSKTQFIDFVTSHDGVWMVTIEKIVISMHKGKFFEDKSRFCLVNLDQRKRLDHFILPFGRSIIRLSP
QGKFLIVNHMSDFEELSIWKIKKGKFQLLWKTPHYLNVRGLSLKNTQNLDVKNTLLLYGLKNRVSEEL
>Mature_948_residues
MLLSSSIDSNINSKIFVDNKQNPSFPSPLAIKIGLEIFKYLESLDQKQTRLVCRKWKQLIDKVHIVERYNIRLMNGAEVR
QEATNCLSKYKKLKIEQRFFLMIVKLSKDCIKIKVAAANALMILKKTNFSFVGSDFRGIQAPGVRLARANLNKANFSGAN
LEGADFTGCSLENVILDGAELKDVQFGQLPYLNHLSNILAMAVSPDGKHLASVDWDSFYIWNLETFEAQTQILATRVNPK
SAFPKYNFLQFFQNGQFLFRASCMEKDKLLRKRDGKIEIWKTNPLTMINSLLIENIEFFSLLALTQDEKMLITVGIKDQF
SPMPKIEICLWQINFNTLHIPQLQPKPVKKKIIMGFSVIASRYAPKNSIIAILVIEHARECLRGECVKFYTLPDLEEVKQ
GLVFQLSEKKKIAPGNIMFYDMIFTPQESHFVIINRAIAGESKSEVHSWSTKNNQKKFLFFEEGTITHLQFLSDNSQMAY
FITSGRHGITFFRIRDKDFKLKFSERLSLKNSDDCDNYKDTLHFISNGQFVFQSKIKQISIASLKAFVGKKEFPLSLRDM
YFSPDEQKVFLWSYEHRNTYWPNLENTYILHKVENKLYTYQTFNGKKLRNKKLPKPFSAPRWFEDWGCRLSSNAQYCIRT
CPSESNGKNKITISQVENEKVQASYAGSFLTYSLSKDNRYLVFIYQNQFKLIEIDFEKHNQLVDMDSTQQKLAVSLPCLL
GKEKIKYTLSDHVFPVTTLALSNIETGQISIWEINWEAKQVQEVFQCLTKLFSTEFCLYGQSNFYFQQSKFYFQENEQAL
VVWDKKTHSKQTIKSKTQFIDFVTSHDGVWMVTIEKIVISMHKGKFFEDKSRFCLVNLDQRKRLDHFILPFGRSIIRLSP
QGKFLIVNHMSDFEELSIWKIKKGKFQLLWKTPHYLNVRGLSLKNTQNLDVKNTLLLYGLKNRVSEEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 110218; Mature: 110218

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00014 ER_TARGET ; PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSSSIDSNINSKIFVDNKQNPSFPSPLAIKIGLEIFKYLESLDQKQTRLVCRKWKQLI
CCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKVHIVERYNIRLMNGAEVRQEATNCLSKYKKLKIEQRFFLMIVKLSKDCIKIKVAAANA
HHEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEEEEEEECCCEEEEEEEECCE
LMILKKTNFSFVGSDFRGIQAPGVRLARANLNKANFSGANLEGADFTGCSLENVILDGAE
EEEEEECCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCC
LKDVQFGQLPYLNHLSNILAMAVSPDGKHLASVDWDSFYIWNLETFEAQTQILATRVNPK
CCCCCCCCCCHHHHHHHHEEEEECCCCCEEEEECCCCEEEEEEEHHHCCEEEEEEECCCH
SAFPKYNFLQFFQNGQFLFRASCMEKDKLLRKRDGKIEIWKTNPLTMINSLLIENIEFFS
HCCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEE
LLALTQDEKMLITVGIKDQFSPMPKIEICLWQINFNTLHIPQLQPKPVKKKIIMGFSVIA
EEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCHHHHHHHHHHHH
SRYAPKNSIIAILVIEHARECLRGECVKFYTLPDLEEVKQGLVFQLSEKKKIAPGNIMFY
HHCCCCCCEEEEEEEHHHHHHHCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCEEEE
DMIFTPQESHFVIINRAIAGESKSEVHSWSTKNNQKKFLFFEEGTITHLQFLSDNSQMAY
EEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEE
FITSGRHGITFFRIRDKDFKLKFSERLSLKNSDDCDNYKDTLHFISNGQFVFQSKIKQIS
EEECCCCCEEEEEEECCCEEEEEHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHH
IASLKAFVGKKEFPLSLRDMYFSPDEQKVFLWSYEHRNTYWPNLENTYILHKVENKLYTY
HHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCEEEE
QTFNGKKLRNKKLPKPFSAPRWFEDWGCRLSSNAQYCIRTCPSESNGKNKITISQVENEK
EECCCCCCCCCCCCCCCCCCCCHHHHCCEECCCCCEEEEECCCCCCCCCEEEEEECCCCE
VQASYAGSFLTYSLSKDNRYLVFIYQNQFKLIEIDFEKHNQLVDMDSTQQKLAVSLPCLL
EEHEECCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCEECCCCCHHHHEEECCHHC
GKEKIKYTLSDHVFPVTTLALSNIETGQISIWEINWEAKQVQEVFQCLTKLFSTEFCLYG
CCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEC
QSNFYFQQSKFYFQENEQALVVWDKKTHSKQTIKSKTQFIDFVTSHDGVWMVTIEKIVIS
CCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHEEEEECCCCEEEEEEHHHHHH
MHKGKFFEDKSRFCLVNLDQRKRLDHFILPFGRSIIRLSPQGKFLIVNHMSDFEELSIWK
HHCCCEECCCCCEEEEECHHHHCCCHHEECCCCEEEEECCCCCEEEEECCCCCCCCEEEE
IKKGKFQLLWKTPHYLNVRGLSLKNTQNLDVKNTLLLYGLKNRVSEEL
EECCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEEEEEHHHHHCCCC
>Mature Secondary Structure
MLLSSSIDSNINSKIFVDNKQNPSFPSPLAIKIGLEIFKYLESLDQKQTRLVCRKWKQLI
CCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKVHIVERYNIRLMNGAEVRQEATNCLSKYKKLKIEQRFFLMIVKLSKDCIKIKVAAANA
HHEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHEEEEEEEECCCEEEEEEEECCE
LMILKKTNFSFVGSDFRGIQAPGVRLARANLNKANFSGANLEGADFTGCSLENVILDGAE
EEEEEECCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCC
LKDVQFGQLPYLNHLSNILAMAVSPDGKHLASVDWDSFYIWNLETFEAQTQILATRVNPK
CCCCCCCCCCHHHHHHHHEEEEECCCCCEEEEECCCCEEEEEEEHHHCCEEEEEEECCCH
SAFPKYNFLQFFQNGQFLFRASCMEKDKLLRKRDGKIEIWKTNPLTMINSLLIENIEFFS
HCCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEE
LLALTQDEKMLITVGIKDQFSPMPKIEICLWQINFNTLHIPQLQPKPVKKKIIMGFSVIA
EEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCHHHHHHHHHHHH
SRYAPKNSIIAILVIEHARECLRGECVKFYTLPDLEEVKQGLVFQLSEKKKIAPGNIMFY
HHCCCCCCEEEEEEEHHHHHHHCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCEEEE
DMIFTPQESHFVIINRAIAGESKSEVHSWSTKNNQKKFLFFEEGTITHLQFLSDNSQMAY
EEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEE
FITSGRHGITFFRIRDKDFKLKFSERLSLKNSDDCDNYKDTLHFISNGQFVFQSKIKQIS
EEECCCCCEEEEEEECCCEEEEEHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHH
IASLKAFVGKKEFPLSLRDMYFSPDEQKVFLWSYEHRNTYWPNLENTYILHKVENKLYTY
HHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCEEEE
QTFNGKKLRNKKLPKPFSAPRWFEDWGCRLSSNAQYCIRTCPSESNGKNKITISQVENEK
EECCCCCCCCCCCCCCCCCCCCHHHHCCEECCCCCEEEEECCCCCCCCCEEEEEECCCCE
VQASYAGSFLTYSLSKDNRYLVFIYQNQFKLIEIDFEKHNQLVDMDSTQQKLAVSLPCLL
EEHEECCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCEECCCCCHHHHEEECCHHC
GKEKIKYTLSDHVFPVTTLALSNIETGQISIWEINWEAKQVQEVFQCLTKLFSTEFCLYG
CCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEC
QSNFYFQQSKFYFQENEQALVVWDKKTHSKQTIKSKTQFIDFVTSHDGVWMVTIEKIVIS
CCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHEEEEECCCCEEEEEEHHHHHH
MHKGKFFEDKSRFCLVNLDQRKRLDHFILPFGRSIIRLSPQGKFLIVNHMSDFEELSIWK
HHCCCEECCCCCEEEEECHHHHCCCHHEECCCCEEEEECCCCCEEEEECCCCCCCCEEEE
IKKGKFQLLWKTPHYLNVRGLSLKNTQNLDVKNTLLLYGLKNRVSEEL
EECCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA